-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_887

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41421.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1037, 1099
Sorry, prediction GeneMark_model.108551_t fails validation.
(GGC)	 AG	1037-1099	GT	GAG
(GAG)	 AG	1159-1187	GT	GAG
(GGG)	 AG	1219-1386	GT	GAG
(AAC)	 AG	1448-1489	GT	GAG
(ATG)	 AG	2388-2496	GT	GGG
(GAG)	 AG	2844-2962	GT	GGG
(ACG)	 AG	2992-3060	GT	CAG
(AGG)	 AG	3112-3135	GT	GGG
(GTG)	 AG	3158-3161	GA	GAG
-recovered GeneMark_model.108551_t, initial, 2388, 2496
-recovered GeneMark_model.108551_t, terminal, 3158, 3161
-recovered GeneMark_model.108551_t, internal, 1037, 1099
-recovered GeneMark_model.108551_t, internal, 1159, 1187
-recovered GeneMark_model.108551_t, internal, 1219, 1386
-recovered GeneMark_model.108551_t, internal, 1448, 1489
-recovered GeneMark_model.108551_t, internal, 2388, 2496
-recovered GeneMark_model.108551_t, internal, 2844, 2962
-recovered GeneMark_model.108551_t, internal, 2992, 3060
-recovered GeneMark_model.108551_t, internal, 3112, 3135
Couldn't classify 2820, 3034
Sorry, prediction snap_scaffold_887-snap.1-T1 fails validation.
(ATG)	 TC	1011-1087	GT	GCG
(GGG)	 AG	2403-2496	GT	GGG
(TCC)	 AG	2820-3034	GT	AGG
-recovered snap_scaffold_887-snap.1-T1, initial, 1011, 1087
-recovered snap_scaffold_887-snap.1-T1, internal, 2403, 2496
-recovered snap_scaffold_887-snap.1-T1, internal, 2820, 3034
Valid prediction for snap_scaffold_887-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4059
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support