-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_886

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 71, 581
Sorry, prediction Augustus_model.g41420.t1 fails validation.
(ACG)	 AG	71-581	GT	GGG
(TCA)	 AG	2329-2671	CA	AAC
-recovered Augustus_model.g41420.t1, terminal, 2329, 2671
-recovered Augustus_model.g41420.t1, internal, 71, 581
Couldn't classify 71, 558
Couldn't classify 3886, 3951
Sorry, prediction GeneMark_model.108550_t fails validation.
(ACG)	 AG	71-558	GT	CTG
(GGC)	 AG	2183-2253	GT	CGG
(GAG)	 AG	2344-2613	GT	CCG
(ATA)	 AG	2761-2949	GT	CCG
(GAG)	 AG	3176-3466	GT	TTG
(AGG)	 AG	3886-3951	GT	AGG
-recovered GeneMark_model.108550_t, internal, 71, 558
-recovered GeneMark_model.108550_t, internal, 2183, 2253
-recovered GeneMark_model.108550_t, internal, 2344, 2613
-recovered GeneMark_model.108550_t, internal, 2761, 2949
-recovered GeneMark_model.108550_t, internal, 3176, 3466
-recovered GeneMark_model.108550_t, internal, 3886, 3951
Couldn't classify 71, 581
Sorry, prediction snap_scaffold_886-snap.2-T1 fails validation.
(ACG)	 AG	71-581	GT	GGG
(TCA)	 AG	2329-2671	CA	AAC
-recovered snap_scaffold_886-snap.2-T1, terminal, 2329, 2671
-recovered snap_scaffold_886-snap.2-T1, internal, 71, 581
Valid prediction for snap_scaffold_886-snap.1-T1
Couldn't classify 154, 581
Sorry, prediction GlimmerHMM_glimmerT_62316-T1 fails validation.
(CTG)	 AG	154-581	GT	GGG
(TCA)	 AG	2329-2671	CA	AAC
-recovered GlimmerHMM_glimmerT_62316-T1, terminal, 2329, 2671
-recovered GlimmerHMM_glimmerT_62316-T1, internal, 154, 581

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4064
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support