-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_885

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1239, 1344
Couldn't classify 4019, 4051
Sorry, prediction GeneMark_model.108549_t fails validation.
(CGG)	 AG	1239-1344	GT	GAG
(AAA)	 AG	2864-2911	GT	AGG
(AGA)	 AG	2942-2995	GT	GTG
(GTG)	 AG	3018-3059	GT	AGG
(AGG)	 AG	3080-3097	GT	GGG
(GGA)	 AG	3120-3161	GT	GTG
(GGA)	 AG	3184-3204	GT	GGG
(GGA)	 AG	3251-3265	GT	GGG
(AGA)	 AG	3294-3332	GT	GAG
(GGC)	 AG	3359-3370	GT	GGG
(ACG)	 AG	3450-3527	GT	GGG
(ACC)	 AG	3741-3860	GT	GGG
(AAG)	 AG	3889-3897	GT	GAG
(GAA)	 AG	3930-3998	GT	AAG
(GAG)	 AG	4019-4051	GT	GTG
-recovered GeneMark_model.108549_t, internal, 1239, 1344
-recovered GeneMark_model.108549_t, internal, 2864, 2911
-recovered GeneMark_model.108549_t, internal, 2942, 2995
-recovered GeneMark_model.108549_t, internal, 3018, 3059
-recovered GeneMark_model.108549_t, internal, 3080, 3097
-recovered GeneMark_model.108549_t, internal, 3120, 3161
-recovered GeneMark_model.108549_t, internal, 3184, 3204
-recovered GeneMark_model.108549_t, internal, 3251, 3265
-recovered GeneMark_model.108549_t, internal, 3294, 3332
-recovered GeneMark_model.108549_t, internal, 3359, 3370
-recovered GeneMark_model.108549_t, internal, 3450, 3527
-recovered GeneMark_model.108549_t, internal, 3741, 3860
-recovered GeneMark_model.108549_t, internal, 3889, 3897
-recovered GeneMark_model.108549_t, internal, 3930, 3998
-recovered GeneMark_model.108549_t, internal, 4019, 4051

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 443, 554
Sorry, prediction GlimmerHMM_glimmerT_62315-T1 fails validation.
(ACT)	 AG	443-554	GT	AGG
(TCG)	 AG	2649-2894	CC	GAC
-recovered GlimmerHMM_glimmerT_62315-T1, terminal, 2649, 2894
-recovered GlimmerHMM_glimmerT_62315-T1, internal, 443, 554
Couldn't classify 443, 554
Couldn't classify 2649, 2787
Sorry, prediction snap_scaffold_885-snap.1-T1 fails validation.
(ACT)	 AG	443-554	GT	AGG
(TCG)	 AG	2649-2787	GT	GGG
-recovered snap_scaffold_885-snap.1-T1, internal, 443, 554
-recovered snap_scaffold_885-snap.1-T1, internal, 2649, 2787

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4066
-exon list size: 40


building trellis

2.4    
4.8    
7.1    
9.5    
11.9    
14.3    
16.7    
19.0    
21.4    
23.8    
26.2    
28.6    
31.0    
33.3    
35.7    
38.1    
40.5    
42.9    
45.2    
47.6    
50.0    
52.4    
54.8    
57.1    
59.5    
61.9    
64.3    
66.7    
69.0    
71.4    
73.8    
76.2    
78.6    
81.0    
83.3    
85.7    
88.1    
90.5    
92.9    
95.2    
97.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support