-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_883

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3308, 3331
Sorry, prediction GeneMark_model.108548_t fails validation.
(ATG)	 TA	2930-3042	GT	AGG
(AGG)	 AG	3090-3275	GT	TGG
(GGG)	 AG	3308-3331	GT	GTG
-recovered GeneMark_model.108548_t, initial, 2930, 3042
-recovered GeneMark_model.108548_t, internal, 3090, 3275
-recovered GeneMark_model.108548_t, internal, 3308, 3331
Couldn't classify 2169, 2345
Sorry, prediction snap_scaffold_883-snap.1-T1 fails validation.
(AGT)	 AG	2169-2345	GT	CGG
(AAG)	 AG	2812-3137	GT	GGG
(ATT)	 AG	3686-3759	GA	AAG
-recovered snap_scaffold_883-snap.1-T1, terminal, 3686, 3759
-recovered snap_scaffold_883-snap.1-T1, internal, 2169, 2345
-recovered snap_scaffold_883-snap.1-T1, internal, 2812, 3137

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2247, 2375
Sorry, prediction GeneMark_model.108547_t fails validation.
(ATG)	 AG	1374-1396	GT	GGG
(GGC)	 AG	1445-1549	GT	GAG
(GGT)	 AG	1645-1653	GT	AGG
(AGA)	 AG	1680-1693	GT	AGG
(CGG)	 AG	1843-1879	GT	TGG
(GGA)	 AG	2247-2375	GT	GGG
-recovered GeneMark_model.108547_t, initial, 1374, 1396
-recovered GeneMark_model.108547_t, internal, 1374, 1396
-recovered GeneMark_model.108547_t, internal, 1445, 1549
-recovered GeneMark_model.108547_t, internal, 1645, 1653
-recovered GeneMark_model.108547_t, internal, 1680, 1693
-recovered GeneMark_model.108547_t, internal, 1843, 1879
-recovered GeneMark_model.108547_t, internal, 2247, 2375

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4076
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support