-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_881

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108544_t
Valid prediction for snap_scaffold_881-snap.1-T1
add_exon() Sorry, snap_scaffold_881-snap.1-T1 1161-1545-terminal-1 is invalid.
Couldn't classify 3111, 3267
Sorry, prediction snap_scaffold_881-snap.2-T1 fails validation.
(ATG)	 AG	1792-1981	GT	AAG
(ATA)	 AG	3111-3267	GT	AGG
-recovered snap_scaffold_881-snap.2-T1, initial, 1792, 1981
-recovered snap_scaffold_881-snap.2-T1, internal, 1792, 1981
-recovered snap_scaffold_881-snap.2-T1, internal, 3111, 3267

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4085
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support