-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_878

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3944, 4017
Sorry, prediction GeneMark_model.108539_t fails validation.
(ATG)	 TA	3012-3088	GT	AGG
(ACA)	 AG	3752-3796	GC	GGG
(AGA)	 AG	3866-3922	GT	AAG
(GAA)	 AG	3944-4017	GC	AGG
-recovered GeneMark_model.108539_t, initial, 3012, 3088
-recovered GeneMark_model.108539_t, internal, 3752, 3796
-recovered GeneMark_model.108539_t, internal, 3866, 3922
-recovered GeneMark_model.108539_t, internal, 3944, 4017

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62310-T1
Couldn't classify 4023, 4084
Sorry, prediction snap_scaffold_878-snap.1-T1 fails validation.
(ATG)	 CC	1807-1811	GT	AGG
(AGA)	 AG	3611-3998	GT	TGG
(ACT)	 AG	4023-4084	GT	ACG
-recovered snap_scaffold_878-snap.1-T1, initial, 1807, 1811
-recovered snap_scaffold_878-snap.1-T1, internal, 3611, 3998
-recovered snap_scaffold_878-snap.1-T1, internal, 4023, 4084
Couldn't classify 3617, 4084
Sorry, prediction GeneMark_model.108538_t fails validation.
(ATG)	 AG	3284-3300	GT	GAG
(CGA)	 AG	3617-4084	GT	ACG
-recovered GeneMark_model.108538_t, initial, 3284, 3300
-recovered GeneMark_model.108538_t, internal, 3284, 3300
-recovered GeneMark_model.108538_t, internal, 3617, 4084
Couldn't classify 3639, 4091
Sorry, prediction pasa_asmbl_53711.p1 fails validation.
(ATG)	 GC	3639-4091	CT	GAC

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4104
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support