-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_876

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108535_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3839, 3947
Sorry, prediction GeneMark_model.108534_t fails validation.
(ATG)	 GG	3736-3755	GT	AGG
(AGA)	 AG	3805-3813	GT	AGG
(AGA)	 AG	3839-3947	GT	AGG
-recovered GeneMark_model.108534_t, initial, 3736, 3755
-recovered GeneMark_model.108534_t, internal, 3805, 3813
-recovered GeneMark_model.108534_t, internal, 3839, 3947
Valid prediction for GeneMark_model.108537_t
Valid prediction for Augustus_model.g41414.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4111
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support