-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_875

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 983, 1344
Sorry, prediction snap_scaffold_875-snap.1-T1 fails validation.
(ACG)	 AG	983-1344	GT	AAG
-recovered snap_scaffold_875-snap.1-T1, internal, 983, 1344
Valid prediction for GeneMark_model.108533_t
Couldn't classify 983, 1203
Sorry, prediction GeneMark_model.108531_t fails validation.
(ACG)	 AG	983-1203	GT	GAG
(GAA)	 AG	1225-1344	GT	AAG
(GAA)	 AG	1370-1400	GA	AAG
-recovered GeneMark_model.108531_t, terminal, 1370, 1400
-recovered GeneMark_model.108531_t, internal, 983, 1203
-recovered GeneMark_model.108531_t, internal, 1225, 1344

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108532_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4113
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support