-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_874

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3710, 3778
Sorry, prediction GeneMark_model.108530_t fails validation.
(ATG)	 GA	201-217	GT	GTG
(GAG)	 AG	2965-3162	GT	ATG
(AGG)	 AG	3506-3586	GT	GGG
(GGG)	 AG	3614-3685	GC	GGG
(GAG)	 AG	3710-3778	GT	AAG
-recovered GeneMark_model.108530_t, initial, 201, 217
-recovered GeneMark_model.108530_t, internal, 2965, 3162
-recovered GeneMark_model.108530_t, internal, 3506, 3586
-recovered GeneMark_model.108530_t, internal, 3614, 3685
-recovered GeneMark_model.108530_t, internal, 3710, 3778
Valid prediction for snap_scaffold_874-snap.1-T1
add_exon() Sorry, snap_scaffold_874-snap.1-T1 3456-3744-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4113
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support