-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_873

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62308-T1
Valid prediction for GlimmerHMM_glimmerT_62309-T1
Couldn't classify 49, 71
Couldn't classify 2041, 2063
Sorry, prediction GeneMark_model.108529_t fails validation.
(CAG)	 AG	49-71	GT	GGG
(TGT)	 AG	94-447	GT	GCG
(GTC)	 AG	539-712	GT	AGG
(GCG)	 AG	733-750	GT	AGG
(GAG)	 AG	774-779	GT	AGG
(GAG)	 AG	808-813	GT	AGG
(GAG)	 AG	844-867	GT	AGG
(GAG)	 AG	898-903	GT	AGG
(GGG)	 AG	1818-1823	GT	AGG
(GAG)	 AG	1850-1867	GT	AGG
(GGG)	 AG	1902-1932	GT	AGG
(CGT)	 AG	2041-2063	GT	TGG
-recovered GeneMark_model.108529_t, internal, 49, 71
-recovered GeneMark_model.108529_t, internal, 94, 447
-recovered GeneMark_model.108529_t, internal, 539, 712
-recovered GeneMark_model.108529_t, internal, 733, 750
-recovered GeneMark_model.108529_t, internal, 774, 779
-recovered GeneMark_model.108529_t, internal, 808, 813
-recovered GeneMark_model.108529_t, internal, 844, 867
-recovered GeneMark_model.108529_t, internal, 898, 903
-recovered GeneMark_model.108529_t, internal, 1818, 1823
-recovered GeneMark_model.108529_t, internal, 1850, 1867
-recovered GeneMark_model.108529_t, internal, 1902, 1932
-recovered GeneMark_model.108529_t, internal, 2041, 2063
Valid prediction for Augustus_model.g41413.t1
add_exon() Sorry, Augustus_model.g41413.t1 49-469-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2032, 2096
Couldn't classify 3438, 4073
Sorry, prediction snap_scaffold_873-snap.1-T1 fails validation.
(GAT)	 AG	2032-2096	GT	AGG
(TTG)	 AG	3438-4073	GT	AGG
-recovered snap_scaffold_873-snap.1-T1, internal, 2032, 2096
-recovered snap_scaffold_873-snap.1-T1, internal, 3438, 4073

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4115
-exon list size: 37


building trellis

2.6    
5.1    
7.7    
10.3    
12.8    
15.4    
17.9    
20.5    
23.1    
25.6    
28.2    
30.8    
33.3    
35.9    
38.5    
41.0    
43.6    
46.2    
48.7    
51.3    
53.8    
56.4    
59.0    
61.5    
64.1    
66.7    
69.2    
71.8    
74.4    
76.9    
79.5    
82.1    
84.6    
87.2    
89.7    
92.3    
94.9    
97.4    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support