-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_871

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3849, 3981
Sorry, prediction snap_scaffold_871-snap.1-T1 fails validation.
(ATG)	 CA	228-236	GT	GGG
(GTT)	 AG	1073-1120	GT	AAG
(GGC)	 AG	3849-3981	GT	GGG
-recovered snap_scaffold_871-snap.1-T1, initial, 228, 236
-recovered snap_scaffold_871-snap.1-T1, internal, 1073, 1120
-recovered snap_scaffold_871-snap.1-T1, internal, 3849, 3981
Couldn't classify 3849, 3981
Sorry, prediction Augustus_model.g41412.t1 fails validation.
(ATG)	 AG	749-781	GT	AGG
(GTT)	 AG	1073-1120	GT	AAG
(GGC)	 AG	3849-3981	GT	GGG
-recovered Augustus_model.g41412.t1, initial, 749, 781
-recovered Augustus_model.g41412.t1, internal, 749, 781
-recovered Augustus_model.g41412.t1, internal, 1073, 1120
-recovered Augustus_model.g41412.t1, internal, 3849, 3981

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 34, 90
Sorry, prediction GeneMark_model.108526_t fails validation.
(GTG)	 AG	34-90	GT	GGG
(GTG)	 AG	133-223	GT	GAG
(GCC)	 AG	275-282	GT	GGG
(GAA)	 AG	305-343	GT	AGG
(GAA)	 AG	365-391	GT	GTG
(AAG)	 AG	417-456	AG	AGA
-recovered GeneMark_model.108526_t, terminal, 417, 456
-recovered GeneMark_model.108526_t, internal, 34, 90
-recovered GeneMark_model.108526_t, internal, 133, 223
-recovered GeneMark_model.108526_t, internal, 275, 282
-recovered GeneMark_model.108526_t, internal, 305, 343
-recovered GeneMark_model.108526_t, internal, 365, 391
Couldn't classify 151, 223
Couldn't classify 3731, 3846
Sorry, prediction snap_scaffold_871-snap.2-T1 fails validation.
(CAT)	 AG	151-223	GT	GAG
(GCC)	 AG	275-368	GT	AGG
(GGG)	 AG	3407-3424	GT	ATG
(TGA)	 AG	3731-3846	GT	CGG
-recovered snap_scaffold_871-snap.2-T1, internal, 151, 223
-recovered snap_scaffold_871-snap.2-T1, internal, 275, 368
-recovered snap_scaffold_871-snap.2-T1, internal, 3407, 3424
-recovered snap_scaffold_871-snap.2-T1, internal, 3731, 3846
Valid prediction for GlimmerHMM_glimmerT_62307-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3981, rend_intergenic: 280  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4125
-exon list size: 29


building trellis

3.2    
6.5    
9.7    
12.9    
16.1    
19.4    
22.6    
25.8    
29.0    
32.3    
35.5    
38.7    
41.9    
45.2    
48.4    
51.6    
54.8    
58.1    
61.3    
64.5    
67.7    
71.0    
74.2    
77.4    
80.6    
83.9    
87.1    
90.3    
93.5    
96.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3981, rend_intergenic: 280  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support