-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_870

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2229, 2315
Sorry, prediction GeneMark_model.108524_t fails validation.
(GGA)	 AG	2229-2315	GT	CAG
(AGG)	 AG	2337-2451	GT	GAG
(AGA)	 AG	2690-2800	GA	AGG
-recovered GeneMark_model.108524_t, terminal, 2690, 2800
-recovered GeneMark_model.108524_t, internal, 2229, 2315
-recovered GeneMark_model.108524_t, internal, 2337, 2451

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 834, 965
Sorry, prediction snap_scaffold_870-snap.1-T1 fails validation.
(ATG)	 AG	651-823	GT	TCG
(GGG)	 AG	834-965	GT	TGG
-recovered snap_scaffold_870-snap.1-T1, initial, 651, 823
-recovered snap_scaffold_870-snap.1-T1, internal, 651, 823
-recovered snap_scaffold_870-snap.1-T1, internal, 834, 965
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GeneMark_model.108525_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4139
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support