-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_869

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3257, 3427
Sorry, prediction GlimmerHMM_glimmerT_62306-T1 fails validation.
(ATG)	 CC	1319-1322	GT	GGG
(ATA)	 AG	3257-3427	GT	GTG
-recovered GlimmerHMM_glimmerT_62306-T1, initial, 1319, 1322
-recovered GlimmerHMM_glimmerT_62306-T1, internal, 3257, 3427
Valid prediction for Augustus_model.g41411.t1
Couldn't classify 1132, 1300
Sorry, prediction snap_scaffold_869-snap.2-T1 fails validation.
(ATA)	 AG	1132-1300	GT	GGG
(AAC)	 AG	1800-2057	GT	CGG
(AGT)	 AG	2680-2687	GT	ACG
(ATA)	 AG	3257-3441	CC	AAC
-recovered snap_scaffold_869-snap.2-T1, terminal, 3257, 3441
-recovered snap_scaffold_869-snap.2-T1, internal, 1132, 1300
-recovered snap_scaffold_869-snap.2-T1, internal, 1800, 2057
-recovered snap_scaffold_869-snap.2-T1, internal, 2680, 2687
Valid prediction for GlimmerHMM_glimmerT_62305-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 712, 831
Couldn't classify 3881, 3963
Sorry, prediction GeneMark_model.108523_t fails validation.
(TGA)	 AG	712-831	GT	AGG
(CCG)	 AG	870-1062	GC	GAG
(GGT)	 AG	1084-1095	GT	TCG
(AGA)	 AG	1139-1165	GT	AGG
(GGG)	 AG	1194-1250	GT	AGG
(GAG)	 AG	1282-1312	GT	GAG
(GAG)	 AG	1359-1384	GT	GAG
(GCC)	 AG	2874-3265	GT	TGG
(GCC)	 AG	3755-3848	GT	GGG
(CAG)	 AG	3881-3963	GT	TGG
-recovered GeneMark_model.108523_t, internal, 712, 831
-recovered GeneMark_model.108523_t, internal, 870, 1062
-recovered GeneMark_model.108523_t, internal, 1084, 1095
-recovered GeneMark_model.108523_t, internal, 1139, 1165
-recovered GeneMark_model.108523_t, internal, 1194, 1250
-recovered GeneMark_model.108523_t, internal, 1282, 1312
-recovered GeneMark_model.108523_t, internal, 1359, 1384
-recovered GeneMark_model.108523_t, internal, 2874, 3265
-recovered GeneMark_model.108523_t, internal, 3755, 3848
-recovered GeneMark_model.108523_t, internal, 3881, 3963
Couldn't classify 690, 1084
Couldn't classify 3831, 3963
Sorry, prediction snap_scaffold_869-snap.1-T1 fails validation.
(GAC)	 AG	690-1084	GT	GGG
(GGT)	 AG	1991-2106	GT	TGG
(TCA)	 AG	3658-3767	GT	GGG
(GCC)	 AG	3831-3963	GT	TGG
-recovered snap_scaffold_869-snap.1-T1, internal, 690, 1084
-recovered snap_scaffold_869-snap.1-T1, internal, 1991, 2106
-recovered snap_scaffold_869-snap.1-T1, internal, 3658, 3767
-recovered snap_scaffold_869-snap.1-T1, internal, 3831, 3963

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3459, rend_intergenic: 1132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4148
-exon list size: 39


building trellis

2.4    
4.9    
7.3    
9.8    
12.2    
14.6    
17.1    
19.5    
22.0    
24.4    
26.8    
29.3    
31.7    
34.1    
36.6    
39.0    
41.5    
43.9    
46.3    
48.8    
51.2    
53.7    
56.1    
58.5    
61.0    
63.4    
65.9    
68.3    
70.7    
73.2    
75.6    
78.0    
80.5    
82.9    
85.4    
87.8    
90.2    
92.7    
95.1    
97.6    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 3459, rend_intergenic: 1132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support