-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_868

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 23, 517
Sorry, prediction GeneMark_model.108521_t fails validation.
(GGG)	 AG	23-517	GT	GAG
(ACT)	 AG	541-551	GT	GGG
(GGA)	 AG	601-835	GT	GAG
(AGG)	 AG	862-868	AG	AGA
-recovered GeneMark_model.108521_t, terminal, 862, 868
-recovered GeneMark_model.108521_t, internal, 23, 517
-recovered GeneMark_model.108521_t, internal, 541, 551
-recovered GeneMark_model.108521_t, internal, 601, 835
Valid prediction for GlimmerHMM_glimmerT_62304-T1
Couldn't classify 601, 835
Sorry, prediction snap_scaffold_868-snap.1-T1 fails validation.
(GGA)	 AG	601-835	GT	GAG
(GAC)	 AG	2940-2971	CA	GAC
-recovered snap_scaffold_868-snap.1-T1, terminal, 2940, 2971
-recovered snap_scaffold_868-snap.1-T1, internal, 601, 835
Valid prediction for snap_scaffold_868-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 43, 173
Sorry, prediction GeneMark_model.108522_t fails validation.
(GCA)	 AG	43-173	GT	CCG
(GGG)	 AG	287-355	GT	GGG
(AGC)	 AG	380-466	GT	TTG
(AGA)	 AG	668-778	GT	GAG
(AGA)	 AG	808-840	GT	GAG
(AGG)	 AG	1504-1639	AG	AGA
-recovered GeneMark_model.108522_t, terminal, 1504, 1639
-recovered GeneMark_model.108522_t, internal, 43, 173
-recovered GeneMark_model.108522_t, internal, 287, 355
-recovered GeneMark_model.108522_t, internal, 380, 466
-recovered GeneMark_model.108522_t, internal, 668, 778
-recovered GeneMark_model.108522_t, internal, 808, 840

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4150
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support