-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_866

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108516_t
Couldn't classify 381, 485
Couldn't classify 1498, 1533
Sorry, prediction snap_scaffold_866-snap.1-T1 fails validation.
(AAG)	 AG	381-485	GT	GGG
(CCT)	 AG	1214-1315	GT	CGG
(GAA)	 AG	1498-1533	GT	AGG
-recovered snap_scaffold_866-snap.1-T1, internal, 381, 485
-recovered snap_scaffold_866-snap.1-T1, internal, 1214, 1315
-recovered snap_scaffold_866-snap.1-T1, internal, 1498, 1533

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108517_t
Valid prediction for GlimmerHMM_glimmerT_62303-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62303-T1 3763-3943-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4162
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support