-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_865

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3380, 3579
Sorry, prediction snap_scaffold_865-snap.2-T1 fails validation.
(ATG)	 AG	664-669	GT	AGG
(TGG)	 AG	3380-3579	GT	GGG
-recovered snap_scaffold_865-snap.2-T1, initial, 664, 669
-recovered snap_scaffold_865-snap.2-T1, internal, 664, 669
-recovered snap_scaffold_865-snap.2-T1, internal, 3380, 3579
Valid prediction for GeneMark_model.108515_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62302-T1
Couldn't classify 630, 797
Sorry, prediction snap_scaffold_865-snap.1-T1 fails validation.
(CTG)	 AG	630-797	GT	GGG
(AAG)	 AG	3557-3589	CC	AGC
-recovered snap_scaffold_865-snap.1-T1, terminal, 3557, 3589
-recovered snap_scaffold_865-snap.1-T1, internal, 630, 797
Valid prediction for GeneMark_model.108514_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3539, rend_intergenic: 664  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4168
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3539, rend_intergenic: 664  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support