-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_864

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 691, 807
Couldn't classify 4144, 4155
Sorry, prediction GeneMark_model.108513_t fails validation.
(GAG)	 AG	691-807	GT	TTG
(GGG)	 AG	1564-1658	GT	TGG
(TGC)	 AG	3424-3439	GT	GCG
(GAG)	 AG	4144-4155	GT	GAG
-recovered GeneMark_model.108513_t, internal, 691, 807
-recovered GeneMark_model.108513_t, internal, 1564, 1658
-recovered GeneMark_model.108513_t, internal, 3424, 3439
-recovered GeneMark_model.108513_t, internal, 4144, 4155

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 560, 608
Couldn't classify 3518, 3642
Sorry, prediction snap_scaffold_864-snap.1-T1 fails validation.
(GTG)	 AG	560-608	GT	CGG
(TGA)	 AG	1940-1995	GT	AGG
(GGT)	 AG	3163-3250	GT	CAG
(ACA)	 AG	3518-3642	GT	AGG
-recovered snap_scaffold_864-snap.1-T1, internal, 560, 608
-recovered snap_scaffold_864-snap.1-T1, internal, 1940, 1995
-recovered snap_scaffold_864-snap.1-T1, internal, 3163, 3250
-recovered snap_scaffold_864-snap.1-T1, internal, 3518, 3642
Couldn't classify 560, 608
Couldn't classify 3518, 3642
Sorry, prediction Augustus_model.g41410.t1 fails validation.
(GTG)	 AG	560-608	GT	CGG
(TGA)	 AG	1940-1995	GT	AGG
(GGT)	 AG	3163-3250	GT	CAG
(ACA)	 AG	3518-3642	GT	AGG
-recovered Augustus_model.g41410.t1, internal, 560, 608
-recovered Augustus_model.g41410.t1, internal, 1940, 1995
-recovered Augustus_model.g41410.t1, internal, 3163, 3250
-recovered Augustus_model.g41410.t1, internal, 3518, 3642

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4176
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support