-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_863

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108512_t
Couldn't classify 683, 812
Couldn't classify 2952, 3358
Sorry, prediction snap_scaffold_863-snap.2-T1 fails validation.
(GTT)	 AG	683-812	GT	TGG
(GAT)	 AG	2952-3358	GT	AGG
-recovered snap_scaffold_863-snap.2-T1, internal, 683, 812
-recovered snap_scaffold_863-snap.2-T1, internal, 2952, 3358

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62301-T1
Couldn't classify 3342, 3547
Sorry, prediction Augustus_model.g41409.t1 fails validation.
(ATG)	 AG	352-365	GT	AGG
(TCT)	 AG	977-1091	GT	AGG
(GGC)	 AG	3342-3547	GT	GGG
-recovered Augustus_model.g41409.t1, initial, 352, 365
-recovered Augustus_model.g41409.t1, internal, 352, 365
-recovered Augustus_model.g41409.t1, internal, 977, 1091
-recovered Augustus_model.g41409.t1, internal, 3342, 3547
Couldn't classify 977, 1091
Couldn't classify 3342, 3543
Sorry, prediction snap_scaffold_863-snap.1-T1 fails validation.
(TCT)	 AG	977-1091	GT	AGG
(GGC)	 AG	3342-3543	GT	AGG
-recovered snap_scaffold_863-snap.1-T1, internal, 977, 1091
-recovered snap_scaffold_863-snap.1-T1, internal, 3342, 3543
Valid prediction for GeneMark_model.108511_t
Couldn't classify 978, 1091
Couldn't classify 3342, 3542
Sorry, prediction pasa_asmbl_53696.p1 fails validation.
(CTG)	 GT	978-1091	GT	AGG
(GGC)	 AG	3342-3542	GG	GAG

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3200, rend_intergenic: 683  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4176
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3200, rend_intergenic: 683  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support