-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_861

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62297-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62297-T1 1260-1446-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 42, 62
Sorry, prediction GeneMark_model.108508_t fails validation.
(AGA)	 AG	42-62	GT	GAG
(AGA)	 AG	100-108	GT	GAG
(AGA)	 AG	138-146	GT	GAG
(AGA)	 AG	182-190	GT	GAG
(AGA)	 AG	216-224	GT	GAG
(AGA)	 AG	260-286	GT	GAG
(AGA)	 AG	388-408	GT	GAG
(TGT)	 AG	454-474	GT	GTG
(TGT)	 AG	499-537	GT	GAG
(TGT)	 AG	581-601	GT	GTG
(AAA)	 AG	629-661	GC	GGG
(TGT)	 AG	1717-1737	GT	GTG
(AGT)	 AG	1761-1871	GT	GTG
(AGA)	 AG	1894-1901	GT	CAG
(CCA)	 AG	2699-3009	AA	AAA
-recovered GeneMark_model.108508_t, terminal, 2699, 3009
-recovered GeneMark_model.108508_t, internal, 42, 62
-recovered GeneMark_model.108508_t, internal, 100, 108
-recovered GeneMark_model.108508_t, internal, 138, 146
-recovered GeneMark_model.108508_t, internal, 182, 190
-recovered GeneMark_model.108508_t, internal, 216, 224
-recovered GeneMark_model.108508_t, internal, 260, 286
-recovered GeneMark_model.108508_t, internal, 388, 408
-recovered GeneMark_model.108508_t, internal, 454, 474
-recovered GeneMark_model.108508_t, internal, 499, 537
-recovered GeneMark_model.108508_t, internal, 581, 601
-recovered GeneMark_model.108508_t, internal, 629, 661
-recovered GeneMark_model.108508_t, internal, 1717, 1737
-recovered GeneMark_model.108508_t, internal, 1761, 1871
-recovered GeneMark_model.108508_t, internal, 1894, 1901

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4184
-exon list size: 33


building trellis

2.9    
5.7    
8.6    
11.4    
14.3    
17.1    
20.0    
22.9    
25.7    
28.6    
31.4    
34.3    
37.1    
40.0    
42.9    
45.7    
48.6    
51.4    
54.3    
57.1    
60.0    
62.9    
65.7    
68.6    
71.4    
74.3    
77.1    
80.0    
82.9    
85.7    
88.6    
91.4    
94.3    
97.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support