-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_859

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 213, 319
Sorry, prediction GeneMark_model.108504_t fails validation.
(GAT)	 AG	213-319	GT	GGG
(AGA)	 AG	350-367	GT	TGG
(GGG)	 AG	388-411	GT	GGG
(GGA)	 AG	432-437	GT	GGG
(GGA)	 AG	458-463	GT	GGG
(AGA)	 AG	488-493	GT	GGG
(GTA)	 AG	515-518	GA	AGG
-recovered GeneMark_model.108504_t, terminal, 515, 518
-recovered GeneMark_model.108504_t, internal, 213, 319
-recovered GeneMark_model.108504_t, internal, 350, 367
-recovered GeneMark_model.108504_t, internal, 388, 411
-recovered GeneMark_model.108504_t, internal, 432, 437
-recovered GeneMark_model.108504_t, internal, 458, 463
-recovered GeneMark_model.108504_t, internal, 488, 493

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_859-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4188
-exon list size: 18


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support