-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_858

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1361, 1445
Sorry, prediction pasa_asmbl_53693.p1 fails validation.
(GAC)	 TG	1361-1445	GT	AGG
(CCC)	 AG	2832-3055	GG	AGG
-recovered pasa_asmbl_53693.p1, terminal, 2832, 3055
Couldn't classify 1296, 1445
Sorry, prediction Augustus_model.g41405.t1 fails validation.
(GAG)	 AG	1296-1445	GT	AGG
(CCC)	 AG	2832-3055	GG	AGG
-recovered Augustus_model.g41405.t1, terminal, 2832, 3055
-recovered Augustus_model.g41405.t1, internal, 1296, 1445
Valid prediction for GeneMark_model.108503_t
Valid prediction for GlimmerHMM_glimmerT_62295-T1
Couldn't classify 2832, 3038
Sorry, prediction snap_scaffold_858-snap.2-T1 fails validation.
(ATG)	 TC	914-950	GT	AAG
(GAG)	 AG	1296-1445	GT	AGG
(CCC)	 AG	2832-3038	GT	AGG
-recovered snap_scaffold_858-snap.2-T1, initial, 914, 950
-recovered snap_scaffold_858-snap.2-T1, internal, 1296, 1445
-recovered snap_scaffold_858-snap.2-T1, internal, 2832, 3038

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1169, 1290
Sorry, prediction snap_scaffold_858-snap.1-T1 fails validation.
(GTG)	 AG	1169-1290	GT	CGG
(GCC)	 AG	3262-3337	TT	GAT
-recovered snap_scaffold_858-snap.1-T1, terminal, 3262, 3337
-recovered snap_scaffold_858-snap.1-T1, internal, 1169, 1290
Couldn't classify 4078, 4179
Sorry, prediction GeneMark_model.108502_t fails validation.
(ATG)	 TC	3836-3888	GT	AGG
(AAT)	 AG	3944-3973	GT	GAG
(TCA)	 AG	4024-4035	GT	GAG
(AGT)	 AG	4078-4179	GC	CCG
-recovered GeneMark_model.108502_t, initial, 3836, 3888
-recovered GeneMark_model.108502_t, internal, 3944, 3973
-recovered GeneMark_model.108502_t, internal, 4024, 4035
-recovered GeneMark_model.108502_t, internal, 4078, 4179

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3021, rend_intergenic: 914  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4189
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3021, rend_intergenic: 914  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support