-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_855

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 357, 407
Sorry, prediction GeneMark_model.108496_t fails validation.
(ATC)	 AG	357-407	GT	GTG
(AAA)	 AG	524-595	GT	GAG
(GGG)	 AG	642-716	GT	GAG
(AAA)	 AG	741-770	GT	CAG
(AAA)	 AG	1078-1089	GT	CGG
(AGG)	 AG	1118-1135	GT	GAG
(GTC)	 AG	1158-1247	GT	CGG
(GGT)	 AG	1331-1345	GT	AGG
(CGG)	 AG	1368-1400	GT	CGG
(GGG)	 AG	1496-1546	GT	CTG
(CAG)	 AG	1832-1988	GT	AGG
(ACG)	 AG	2011-2060	GT	GGG
(AGA)	 AG	2085-2126	GC	ATG
(CAG)	 AG	2148-2168	GT	GAG
(ACG)	 AG	2260-2370	GT	CAG
(TAG)	 AG	2417-2437	GT	GAG
(GAA)	 AG	2467-2481	GT	GGG
(ACG)	 AG	2555-2635	GT	GGG
(ACG)	 AG	2699-2735	AG	AGA
-recovered GeneMark_model.108496_t, terminal, 2699, 2735
-recovered GeneMark_model.108496_t, internal, 357, 407
-recovered GeneMark_model.108496_t, internal, 524, 595
-recovered GeneMark_model.108496_t, internal, 642, 716
-recovered GeneMark_model.108496_t, internal, 741, 770
-recovered GeneMark_model.108496_t, internal, 1078, 1089
-recovered GeneMark_model.108496_t, internal, 1118, 1135
-recovered GeneMark_model.108496_t, internal, 1158, 1247
-recovered GeneMark_model.108496_t, internal, 1331, 1345
-recovered GeneMark_model.108496_t, internal, 1368, 1400
-recovered GeneMark_model.108496_t, internal, 1496, 1546
-recovered GeneMark_model.108496_t, internal, 1832, 1988
-recovered GeneMark_model.108496_t, internal, 2011, 2060
-recovered GeneMark_model.108496_t, internal, 2085, 2126
-recovered GeneMark_model.108496_t, internal, 2148, 2168
-recovered GeneMark_model.108496_t, internal, 2260, 2370
-recovered GeneMark_model.108496_t, internal, 2417, 2437
-recovered GeneMark_model.108496_t, internal, 2467, 2481
-recovered GeneMark_model.108496_t, internal, 2555, 2635

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 464, 533
Sorry, prediction snap_scaffold_855-snap.1-T1 fails validation.
(GCC)	 AG	464-533	GT	AGG
(CCC)	 AG	2710-2829	GT	CCG
(CCC)	 AG	2856-3174	GT	CAG
(CAC)	 AG	3909-3922	TT	GAT
-recovered snap_scaffold_855-snap.1-T1, terminal, 3909, 3922
-recovered snap_scaffold_855-snap.1-T1, internal, 464, 533
-recovered snap_scaffold_855-snap.1-T1, internal, 2710, 2829
-recovered snap_scaffold_855-snap.1-T1, internal, 2856, 3174

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4207
-exon list size: 34


building trellis

2.8    
5.6    
8.3    
11.1    
13.9    
16.7    
19.4    
22.2    
25.0    
27.8    
30.6    
33.3    
36.1    
38.9    
41.7    
44.4    
47.2    
50.0    
52.8    
55.6    
58.3    
61.1    
63.9    
66.7    
69.4    
72.2    
75.0    
77.8    
80.6    
83.3    
86.1    
88.9    
91.7    
94.4    
97.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support