-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_854

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 10, 86
Sorry, prediction GeneMark_model.108494_t fails validation.
(GCT)	 AG	10-86	GT	GGG
(GCA)	 AG	131-295	GC	AGG
(GCT)	 AG	321-371	GT	GGG
(GCT)	 AG	400-468	GT	GGG
(GCT)	 AG	497-512	AG	AGA
-recovered GeneMark_model.108494_t, terminal, 497, 512
-recovered GeneMark_model.108494_t, internal, 10, 86
-recovered GeneMark_model.108494_t, internal, 131, 295
-recovered GeneMark_model.108494_t, internal, 321, 371
-recovered GeneMark_model.108494_t, internal, 400, 468

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 115, 282
Sorry, prediction GeneMark_model.108495_t fails validation.
(GGT)	 AG	115-282	GT	CTG
(ACC)	 AG	311-342	CT	AAC
-recovered GeneMark_model.108495_t, terminal, 311, 342
-recovered GeneMark_model.108495_t, internal, 115, 282
Valid prediction for snap_scaffold_854-snap.1-T1
Valid prediction for snap_scaffold_854-snap.2-T1
add_exon() Sorry, snap_scaffold_854-snap.2-T1 56-389-terminal-1 is invalid.
Couldn't classify 90, 347
Sorry, prediction GlimmerHMM_glimmerT_62292-T1 fails validation.
(AGA)	 AG	90-347	GT	GGG
(ATG)	 AG	3630-3818	CC	GAC
-recovered GlimmerHMM_glimmerT_62292-T1, terminal, 3630, 3818
-recovered GlimmerHMM_glimmerT_62292-T1, internal, 90, 347

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4210
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support