-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_852

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 192, 314
Sorry, prediction GeneMark_model.108491_t fails validation.
(AAG)	 AG	192-314	GT	AGG
(AAC)	 AG	336-530	GT	GGG
(ACA)	 AG	575-739	GT	CAG
(GGG)	 AG	762-779	GT	AGG
(GGA)	 AG	875-916	GT	AGG
(GGA)	 AG	947-1099	GT	CTG
(TGG)	 AG	1674-1775	GT	AGG
(GGA)	 AG	1802-1816	GT	AAG
(GGA)	 AG	1839-1862	GT	AGG
(GGG)	 AG	1891-1939	AA	GAA
-recovered GeneMark_model.108491_t, terminal, 1891, 1939
-recovered GeneMark_model.108491_t, internal, 192, 314
-recovered GeneMark_model.108491_t, internal, 336, 530
-recovered GeneMark_model.108491_t, internal, 575, 739
-recovered GeneMark_model.108491_t, internal, 762, 779
-recovered GeneMark_model.108491_t, internal, 875, 916
-recovered GeneMark_model.108491_t, internal, 947, 1099
-recovered GeneMark_model.108491_t, internal, 1674, 1775
-recovered GeneMark_model.108491_t, internal, 1802, 1816
-recovered GeneMark_model.108491_t, internal, 1839, 1862

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 895, 921
Sorry, prediction GeneMark_model.108492_t fails validation.
(AGA)	 AG	895-921	GC	GAG
(CGA)	 AG	943-951	GC	GAG
(AGA)	 AG	973-1002	GT	GAG
(AGC)	 AG	1298-1339	GT	GGG
(TGG)	 AG	1361-1390	GT	GAG
(GGG)	 AG	1412-1435	GT	GGG
(GAA)	 AG	1462-1470	GT	GGG
(GGA)	 AG	1596-1835	GT	AGG
(GGA)	 AG	1864-1935	GT	GTG
(TGG)	 AG	1967-1978	GT	AGG
(AGG)	 AG	2001-2051	GC	GGG
(GAA)	 AG	2135-2177	AA	AAA
-recovered GeneMark_model.108492_t, terminal, 1361, 1390
-recovered GeneMark_model.108492_t, terminal, 2135, 2177
-recovered GeneMark_model.108492_t, internal, 895, 921
-recovered GeneMark_model.108492_t, internal, 943, 951
-recovered GeneMark_model.108492_t, internal, 973, 1002
-recovered GeneMark_model.108492_t, internal, 1298, 1339
-recovered GeneMark_model.108492_t, internal, 1361, 1390
-recovered GeneMark_model.108492_t, internal, 1412, 1435
-recovered GeneMark_model.108492_t, internal, 1462, 1470
-recovered GeneMark_model.108492_t, internal, 1596, 1835
-recovered GeneMark_model.108492_t, internal, 1864, 1935
-recovered GeneMark_model.108492_t, internal, 1967, 1978
-recovered GeneMark_model.108492_t, internal, 2001, 2051
Couldn't classify 3420, 3613
Couldn't classify 4036, 4074
Sorry, prediction snap_scaffold_852-snap.1-T1 fails validation.
(CAC)	 AG	3420-3613	GT	GGG
(GTC)	 AG	4036-4074	GT	AGG
-recovered snap_scaffold_852-snap.1-T1, internal, 3420, 3613
-recovered snap_scaffold_852-snap.1-T1, internal, 4036, 4074

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4216
-exon list size: 49


building trellis

2.0    
3.9    
5.9    
7.8    
9.8    
11.8    
13.7    
15.7    
17.6    
19.6    
21.6    
23.5    
25.5    
27.5    
29.4    
31.4    
33.3    
35.3    
37.3    
39.2    
41.2    
43.1    
45.1    
47.1    
49.0    
51.0    
52.9    
54.9    
56.9    
58.8    
60.8    
62.7    
64.7    
66.7    
68.6    
70.6    
72.5    
74.5    
76.5    
78.4    
80.4    
82.4    
84.3    
86.3    
88.2    
90.2    
92.2    
94.1    
96.1    
98.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support