-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_851

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_851-snap.1-T1
Couldn't classify 3502, 3567
Sorry, prediction GeneMark_model.108490_t fails validation.
(ATG)	 AG	2633-2724	GT	AGG
(ATT)	 AG	2748-2753	GT	AGG
(ATT)	 AG	2819-2824	GT	AGG
(GGT)	 AG	3189-3419	GT	CGG
(GGA)	 AG	3448-3474	GT	AAG
(TTG)	 AG	3502-3567	GT	GGG
-recovered GeneMark_model.108490_t, initial, 2633, 2724
-recovered GeneMark_model.108490_t, internal, 2633, 2724
-recovered GeneMark_model.108490_t, internal, 2748, 2753
-recovered GeneMark_model.108490_t, internal, 2819, 2824
-recovered GeneMark_model.108490_t, internal, 3189, 3419
-recovered GeneMark_model.108490_t, internal, 3448, 3474
-recovered GeneMark_model.108490_t, internal, 3502, 3567
Couldn't classify 44, 76
Sorry, prediction GeneMark_model.108489_t fails validation.
(GGA)	 AG	44-76	GT	AGG
(GTT)	 AG	106-114	GT	AGG
(GTT)	 AG	135-143	GT	AGG
(GTT)	 AG	164-172	GT	AGG
(GCA)	 AG	227-268	GT	AGG
(GCA)	 AG	294-335	GT	AGG
(AGA)	 AG	597-605	GT	AGG
(GAG)	 AG	626-658	GT	AGG
(AGA)	 AG	683-691	GT	AGG
(GTG)	 AG	728-742	GT	AGG
(GGA)	 AG	767-796	GT	AGG
(GGA)	 AG	821-829	GT	AGG
(GGA)	 AG	851-859	GT	AGG
(AGA)	 AG	884-892	GT	AGG
(GAG)	 AG	930-968	GT	AGG
(GAG)	 AG	989-997	GT	AGG
(GAG)	 AG	1020-1049	GT	AGG
(GAG)	 AG	1070-1099	GT	AGG
(GAG)	 AG	1201-1292	GC	AGG
(GAG)	 AG	1329-1347	GC	AGG
(GCG)	 AG	1410-1446	AA	AGA
-recovered GeneMark_model.108489_t, terminal, 1410, 1446
-recovered GeneMark_model.108489_t, internal, 44, 76
-recovered GeneMark_model.108489_t, internal, 106, 114
-recovered GeneMark_model.108489_t, internal, 135, 143
-recovered GeneMark_model.108489_t, internal, 164, 172
-recovered GeneMark_model.108489_t, internal, 227, 268
-recovered GeneMark_model.108489_t, internal, 294, 335
-recovered GeneMark_model.108489_t, internal, 597, 605
-recovered GeneMark_model.108489_t, internal, 626, 658
-recovered GeneMark_model.108489_t, internal, 683, 691
-recovered GeneMark_model.108489_t, internal, 728, 742
-recovered GeneMark_model.108489_t, internal, 767, 796
-recovered GeneMark_model.108489_t, internal, 821, 829
-recovered GeneMark_model.108489_t, internal, 851, 859
-recovered GeneMark_model.108489_t, internal, 884, 892
-recovered GeneMark_model.108489_t, internal, 930, 968
-recovered GeneMark_model.108489_t, internal, 989, 997
-recovered GeneMark_model.108489_t, internal, 1020, 1049
-recovered GeneMark_model.108489_t, internal, 1070, 1099
-recovered GeneMark_model.108489_t, internal, 1201, 1292
-recovered GeneMark_model.108489_t, internal, 1329, 1347

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4217
-exon list size: 65


building trellis

1.5    
3.0    
4.5    
6.0    
7.5    
9.0    
10.4    
11.9    
13.4    
14.9    
16.4    
17.9    
19.4    
20.9    
22.4    
23.9    
25.4    
26.9    
28.4    
29.9    
31.3    
32.8    
34.3    
35.8    
37.3    
38.8    
40.3    
41.8    
43.3    
44.8    
46.3    
47.8    
49.3    
50.7    
52.2    
53.7    
55.2    
56.7    
58.2    
59.7    
61.2    
62.7    
64.2    
65.7    
67.2    
68.7    
70.1    
71.6    
73.1    
74.6    
76.1    
77.6    
79.1    
80.6    
82.1    
83.6    
85.1    
86.6    
88.1    
89.6    
91.0    
92.5    
94.0    
95.5    
97.0    
98.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support