-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_850

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_850-snap.1-T1
Couldn't classify 218, 236
Sorry, prediction GeneMark_model.108487_t fails validation.
(ACT)	 AG	218-236	GT	CTG
(AGA)	 AG	345-464	GT	AGG
(GGG)	 AG	595-714	GT	GAG
(GGG)	 AG	743-841	GT	GAG
(GAG)	 AG	864-873	TT	AAT
-recovered GeneMark_model.108487_t, terminal, 864, 873
-recovered GeneMark_model.108487_t, internal, 218, 236
-recovered GeneMark_model.108487_t, internal, 345, 464
-recovered GeneMark_model.108487_t, internal, 595, 714
-recovered GeneMark_model.108487_t, internal, 743, 841

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3682, 3747
Sorry, prediction Augustus_model.g41403.t1 fails validation.
(ATG)	 GA	2947-2977	GT	AGG
(GCT)	 AG	3682-3747	GT	AGG
-recovered Augustus_model.g41403.t1, initial, 2947, 2977
-recovered Augustus_model.g41403.t1, internal, 3682, 3747
Couldn't classify 565, 572
Sorry, prediction GeneMark_model.108488_t fails validation.
(AGC)	 AG	565-572	GT	AAG
(CAA)	 AG	977-1108	GT	GAG
(AGA)	 AG	1134-1307	GT	ACG
(AGG)	 AG	1334-1409	AA	AGA
-recovered GeneMark_model.108488_t, terminal, 1334, 1409
-recovered GeneMark_model.108488_t, internal, 565, 572
-recovered GeneMark_model.108488_t, internal, 977, 1108
-recovered GeneMark_model.108488_t, internal, 1134, 1307

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4217
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support