-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_849

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108484_t
Couldn't classify 3410, 3531
Sorry, prediction snap_scaffold_849-snap.1-T1 fails validation.
(ATG)	 GG	1114-1340	GT	AGG
(ACC)	 AG	3410-3531	GT	GGG
-recovered snap_scaffold_849-snap.1-T1, initial, 1114, 1340
-recovered snap_scaffold_849-snap.1-T1, internal, 3410, 3531

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108485_t
Couldn't classify 1193, 1249
Sorry, prediction GeneMark_model.108486_t fails validation.
(TGG)	 AG	1193-1249	GT	GGG
(AGA)	 AG	1834-1860	GT	GAG
(AGA)	 AG	1882-1986	GT	GAG
(AAG)	 AG	2014-2080	CT	GAC
-recovered GeneMark_model.108486_t, terminal, 2014, 2080
-recovered GeneMark_model.108486_t, internal, 1193, 1249
-recovered GeneMark_model.108486_t, internal, 1834, 1860
-recovered GeneMark_model.108486_t, internal, 1882, 1986

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4226
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support