-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_848

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 343, 463
Sorry, prediction GeneMark_model.108482_t fails validation.
(AGA)	 AG	343-463	GT	CAG
(AGA)	 AG	483-505	GT	GAG
(AGA)	 AG	529-592	GA	AGG
-recovered GeneMark_model.108482_t, terminal, 529, 592
-recovered GeneMark_model.108482_t, internal, 343, 463
-recovered GeneMark_model.108482_t, internal, 483, 505

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62290-T1
Couldn't classify 367, 540
Couldn't classify 3429, 3539
Sorry, prediction snap_scaffold_848-snap.1-T1 fails validation.
(AGG)	 AG	367-540	GT	GTG
(CAG)	 AG	2621-2695	GT	CTG
(CGA)	 AG	3175-3263	GT	ATG
(GGC)	 AG	3429-3539	GT	AGG
-recovered snap_scaffold_848-snap.1-T1, internal, 367, 540
-recovered snap_scaffold_848-snap.1-T1, internal, 2621, 2695
-recovered snap_scaffold_848-snap.1-T1, internal, 3175, 3263
-recovered snap_scaffold_848-snap.1-T1, internal, 3429, 3539
Couldn't classify 11, 140
Sorry, prediction GeneMark_model.108483_t fails validation.
(GCC)	 AG	11-140	GT	AGG
(ATT)	 AG	317-502	GT	GGG
(AGG)	 AG	813-1020	GT	TGG
(CAG)	 AG	2621-2697	GT	GTG
(AGA)	 AG	2735-2758	GT	GAG
(AGA)	 AG	2860-2886	GT	GAG
(TGT)	 AG	2928-2936	GT	GTG
(AGA)	 AG	2958-2966	GT	GAG
(TGT)	 AG	3034-3042	GT	GGG
(AGA)	 AG	3067-3075	GT	GAG
(AGA)	 AG	3125-3138	GT	AAG
(TCT)	 AG	3292-3314	TG	AGT
-recovered GeneMark_model.108483_t, terminal, 3292, 3314
-recovered GeneMark_model.108483_t, internal, 11, 140
-recovered GeneMark_model.108483_t, internal, 317, 502
-recovered GeneMark_model.108483_t, internal, 813, 1020
-recovered GeneMark_model.108483_t, internal, 2621, 2697
-recovered GeneMark_model.108483_t, internal, 2735, 2758
-recovered GeneMark_model.108483_t, internal, 2860, 2886
-recovered GeneMark_model.108483_t, internal, 2928, 2936
-recovered GeneMark_model.108483_t, internal, 2958, 2966
-recovered GeneMark_model.108483_t, internal, 3034, 3042
-recovered GeneMark_model.108483_t, internal, 3067, 3075
-recovered GeneMark_model.108483_t, internal, 3125, 3138

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4227
-exon list size: 40


building trellis

2.4    
4.8    
7.1    
9.5    
11.9    
14.3    
16.7    
19.0    
21.4    
23.8    
26.2    
28.6    
31.0    
33.3    
35.7    
38.1    
40.5    
42.9    
45.2    
47.6    
50.0    
52.4    
54.8    
57.1    
59.5    
61.9    
64.3    
66.7    
69.0    
71.4    
73.8    
76.2    
78.6    
81.0    
83.3    
85.7    
88.1    
90.5    
92.9    
95.2    
97.6    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support