-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_846

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1071, 1670
Sorry, prediction snap_scaffold_846-snap.1-T1 fails validation.
(GCT)	 AG	1071-1670	GT	GGG
(CCC)	 AG	3273-3314	GT	AAG
add_exon() Sorry, snap_scaffold_846-snap.1-T1 3273-3314-terminal-1 is invalid.
-recovered snap_scaffold_846-snap.1-T1, terminal, 3273, 3314
-recovered snap_scaffold_846-snap.1-T1, internal, 1071, 1670
-recovered snap_scaffold_846-snap.1-T1, internal, 3273, 3314

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 581, 594
Couldn't classify 4046, 4054
Sorry, prediction GeneMark_model.108478_t fails validation.
(AAT)	 AG	581-594	GT	GTG
(CTG)	 AG	642-765	GT	GGG
(GCT)	 AG	795-908	GT	TGG
(TAA)	 AG	1002-1010	GT	TGG
(GAG)	 AG	1034-1042	GC	AGG
(GAG)	 AG	1066-1121	GT	GTG
(ATC)	 AG	2590-3050	GT	CTG
(CCC)	 AG	3071-3201	GT	GGG
(GGG)	 AG	3232-3243	GT	GAG
(TGA)	 AG	3298-3313	GT	AGG
(GAT)	 AG	3331-3443	GC	AAG
(ACA)	 AG	3469-3534	GT	AGG
(AAA)	 AG	3917-3943	GT	GAG
(TGG)	 AG	3983-4009	GT	GAG
(AGG)	 AG	4046-4054	GT	GAG
-recovered GeneMark_model.108478_t, internal, 581, 594
-recovered GeneMark_model.108478_t, internal, 642, 765
-recovered GeneMark_model.108478_t, internal, 795, 908
-recovered GeneMark_model.108478_t, internal, 1002, 1010
-recovered GeneMark_model.108478_t, internal, 1034, 1042
-recovered GeneMark_model.108478_t, internal, 1066, 1121
-recovered GeneMark_model.108478_t, internal, 2590, 3050
-recovered GeneMark_model.108478_t, internal, 3071, 3201
-recovered GeneMark_model.108478_t, internal, 3232, 3243
-recovered GeneMark_model.108478_t, internal, 3298, 3313
-recovered GeneMark_model.108478_t, internal, 3331, 3443
-recovered GeneMark_model.108478_t, internal, 3469, 3534
-recovered GeneMark_model.108478_t, internal, 3917, 3943
-recovered GeneMark_model.108478_t, internal, 3983, 4009
-recovered GeneMark_model.108478_t, internal, 4046, 4054

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4242
-exon list size: 36


building trellis

2.6    
5.3    
7.9    
10.5    
13.2    
15.8    
18.4    
21.1    
23.7    
26.3    
28.9    
31.6    
34.2    
36.8    
39.5    
42.1    
44.7    
47.4    
50.0    
52.6    
55.3    
57.9    
60.5    
63.2    
65.8    
68.4    
71.1    
73.7    
76.3    
78.9    
81.6    
84.2    
86.8    
89.5    
92.1    
94.7    
97.4    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support