-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_845

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108475_t
Couldn't classify 604, 741
Sorry, prediction snap_scaffold_845-snap.1-T1 fails validation.
(GAG)	 AG	604-741	GT	AAG
(CGA)	 AG	3863-3970	GT	ATG
(TCC)	 AG	4017-4154	AT	AGA
-recovered snap_scaffold_845-snap.1-T1, terminal, 4017, 4154
-recovered snap_scaffold_845-snap.1-T1, internal, 604, 741
-recovered snap_scaffold_845-snap.1-T1, internal, 3863, 3970
Valid prediction for GeneMark_model.108477_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 110, 188
Couldn't classify 1267, 1706
Sorry, prediction snap_scaffold_845-snap.2-T1 fails validation.
(GCT)	 AG	110-188	GT	CTG
(ACT)	 AG	314-398	GT	AGG
(GTT)	 AG	1267-1706	GT	AAG
-recovered snap_scaffold_845-snap.2-T1, terminal, 314, 398
-recovered snap_scaffold_845-snap.2-T1, internal, 110, 188
-recovered snap_scaffold_845-snap.2-T1, internal, 314, 398
-recovered snap_scaffold_845-snap.2-T1, internal, 1267, 1706
Valid prediction for GeneMark_model.108476_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4154, rend_intergenic: 2538  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4243
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4154, rend_intergenic: 2538  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support