-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_844

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 34, 42
Sorry, prediction GeneMark_model.108473_t fails validation.
(GGG)	 AG	34-42	GT	AAG
(ATG)	 AG	1102-1107	GT	AGG
(AGA)	 AG	1144-1158	GT	AAG
(AGA)	 AG	1184-1198	GT	AGG
(GAA)	 AG	1228-1329	GT	GAG
(TAG)	 AG	1353-1364	GT	GAG
(CAG)	 AG	1388-1399	GT	GAG
(AGA)	 AG	1448-1477	GT	GAG
(CAT)	 AG	1501-1512	GT	GAG
(CAG)	 AG	1536-1547	GT	GAG
(CAG)	 AG	1571-1582	GT	GAG
(CAT)	 AG	1606-1617	GT	GAG
(CAG)	 AG	1641-1652	GT	GAG
(CAG)	 AG	1676-1687	GT	GAG
(CAT)	 AG	1711-1722	GT	GAG
(AGT)	 AG	1756-1764	GT	GAG
(AGA)	 AG	1797-1820	GT	GAG
(AGC)	 AG	1865-1879	GT	GAG
(CGA)	 AG	1902-1925	GT	GAG
(CAG)	 AG	1949-1960	GT	GAG
(CAT)	 AG	1984-1995	GT	GAG
(AGA)	 AG	2022-2051	GT	GAG
(CAT)	 AG	2075-2086	GT	GAG
(CAT)	 AG	2110-2121	GT	GAG
(CGA)	 AG	2159-2186	TT	AAT
-recovered GeneMark_model.108473_t, initial, 1102, 1107
-recovered GeneMark_model.108473_t, terminal, 2159, 2186
-recovered GeneMark_model.108473_t, internal, 34, 42
-recovered GeneMark_model.108473_t, internal, 1102, 1107
-recovered GeneMark_model.108473_t, internal, 1144, 1158
-recovered GeneMark_model.108473_t, internal, 1184, 1198
-recovered GeneMark_model.108473_t, internal, 1228, 1329
-recovered GeneMark_model.108473_t, internal, 1353, 1364
-recovered GeneMark_model.108473_t, internal, 1388, 1399
-recovered GeneMark_model.108473_t, internal, 1448, 1477
-recovered GeneMark_model.108473_t, internal, 1501, 1512
-recovered GeneMark_model.108473_t, internal, 1536, 1547
-recovered GeneMark_model.108473_t, internal, 1571, 1582
-recovered GeneMark_model.108473_t, internal, 1606, 1617
-recovered GeneMark_model.108473_t, internal, 1641, 1652
-recovered GeneMark_model.108473_t, internal, 1676, 1687
-recovered GeneMark_model.108473_t, internal, 1711, 1722
-recovered GeneMark_model.108473_t, internal, 1756, 1764
-recovered GeneMark_model.108473_t, internal, 1797, 1820
-recovered GeneMark_model.108473_t, internal, 1865, 1879
-recovered GeneMark_model.108473_t, internal, 1902, 1925
-recovered GeneMark_model.108473_t, internal, 1949, 1960
-recovered GeneMark_model.108473_t, internal, 1984, 1995
-recovered GeneMark_model.108473_t, internal, 2022, 2051
-recovered GeneMark_model.108473_t, internal, 2075, 2086
-recovered GeneMark_model.108473_t, internal, 2110, 2121

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 36, 66
Sorry, prediction GeneMark_model.108474_t fails validation.
(GGG)	 AG	36-66	GT	AGG
(GGA)	 AG	226-261	GC	AGG
(CCT)	 AG	343-359	GT	AGG
(ACA)	 AG	382-466	CA	GAC
-recovered GeneMark_model.108474_t, terminal, 382, 466
-recovered GeneMark_model.108474_t, internal, 36, 66
-recovered GeneMark_model.108474_t, internal, 226, 261
-recovered GeneMark_model.108474_t, internal, 343, 359

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4243
-exon list size: 64


building trellis

1.5    
3.0    
4.5    
6.1    
7.6    
9.1    
10.6    
12.1    
13.6    
15.2    
16.7    
18.2    
19.7    
21.2    
22.7    
24.2    
25.8    
27.3    
28.8    
30.3    
31.8    
33.3    
34.8    
36.4    
37.9    
39.4    
40.9    
42.4    
43.9    
45.5    
47.0    
48.5    
50.0    
51.5    
53.0    
54.5    
56.1    
57.6    
59.1    
60.6    
62.1    
63.6    
65.2    
66.7    
68.2    
69.7    
71.2    
72.7    
74.2    
75.8    
77.3    
78.8    
80.3    
81.8    
83.3    
84.8    
86.4    
87.9    
89.4    
90.9    
92.4    
93.9    
95.5    
97.0    
98.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support