-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_842

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 38, 70
Sorry, prediction GeneMark_model.108469_t fails validation.
(AGA)	 AG	38-70	GT	GAG
(GAA)	 AG	195-206	GT	AAG
(GGG)	 AG	476-649	GT	GGG
(AGT)	 AG	676-717	GT	GGG
(GGG)	 AG	741-872	GT	GAG
(GGG)	 AG	900-954	GG	GAG
-recovered GeneMark_model.108469_t, terminal, 900, 954
-recovered GeneMark_model.108469_t, internal, 38, 70
-recovered GeneMark_model.108469_t, internal, 195, 206
-recovered GeneMark_model.108469_t, internal, 476, 649
-recovered GeneMark_model.108469_t, internal, 676, 717
-recovered GeneMark_model.108469_t, internal, 741, 872
Valid prediction for GeneMark_model.108471_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62285-T1
Valid prediction for GeneMark_model.108470_t
Couldn't classify 3666, 3838
Sorry, prediction Augustus_model.g41400.t1 fails validation.
(ATG)	 CG	177-300	GT	GGG
(GTT)	 AG	1099-1240	GT	AAG
(AGA)	 AG	2428-2540	GT	CGG
(GAG)	 AG	2633-2710	GT	AGG
(GCA)	 AG	3139-3247	GT	AGG
(CGT)	 AG	3666-3838	GT	AGG
-recovered Augustus_model.g41400.t1, initial, 177, 300
-recovered Augustus_model.g41400.t1, internal, 1099, 1240
-recovered Augustus_model.g41400.t1, internal, 2428, 2540
-recovered Augustus_model.g41400.t1, internal, 2633, 2710
-recovered Augustus_model.g41400.t1, internal, 3139, 3247
-recovered Augustus_model.g41400.t1, internal, 3666, 3838
Couldn't classify 1099, 1240
Sorry, prediction GlimmerHMM_glimmerT_62286-T1 fails validation.
(GTT)	 AG	1099-1240	GT	AAG
(AGA)	 AG	2428-2540	GT	CGG
(GAG)	 AG	2633-2710	GT	AGG
(GCA)	 AG	3139-3251	CC	AAC
-recovered GlimmerHMM_glimmerT_62286-T1, terminal, 3139, 3251
-recovered GlimmerHMM_glimmerT_62286-T1, internal, 1099, 1240
-recovered GlimmerHMM_glimmerT_62286-T1, internal, 2428, 2540
-recovered GlimmerHMM_glimmerT_62286-T1, internal, 2633, 2710
Couldn't classify 3666, 3838
Sorry, prediction snap_scaffold_842-snap.1-T1 fails validation.
(ATG)	 TG	231-300	GT	GGG
(GTT)	 AG	1099-1240	GT	AAG
(AGA)	 AG	2428-2540	GT	CGG
(GAG)	 AG	2633-2710	GT	AGG
(GCA)	 AG	3139-3247	GT	AGG
(CGT)	 AG	3666-3838	GT	AGG
-recovered snap_scaffold_842-snap.1-T1, initial, 231, 300
-recovered snap_scaffold_842-snap.1-T1, internal, 1099, 1240
-recovered snap_scaffold_842-snap.1-T1, internal, 2428, 2540
-recovered snap_scaffold_842-snap.1-T1, internal, 2633, 2710
-recovered snap_scaffold_842-snap.1-T1, internal, 3139, 3247
-recovered snap_scaffold_842-snap.1-T1, internal, 3666, 3838

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4246
-exon list size: 53


building trellis

1.8    
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20.0    
21.8    
23.6    
25.5    
27.3    
29.1    
30.9    
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34.5    
36.4    
38.2    
40.0    
41.8    
43.6    
45.5    
47.3    
49.1    
50.9    
52.7    
54.5    
56.4    
58.2    
60.0    
61.8    
63.6    
65.5    
67.3    
69.1    
70.9    
72.7    
74.5    
76.4    
78.2    
80.0    
81.8    
83.6    
85.5    
87.3    
89.1    
90.9    
92.7    
94.5    
96.4    
98.2    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support