-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_841

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 465, 496
Sorry, prediction Augustus_model.g41399.t1 fails validation.
(ACA)	 AG	465-496	GT	CTG
(GTG)	 AG	1108-1164	GT	AGG
(AGA)	 AG	2595-2960	GA	AAG
-recovered Augustus_model.g41399.t1, terminal, 2595, 2960
-recovered Augustus_model.g41399.t1, internal, 465, 496
-recovered Augustus_model.g41399.t1, internal, 1108, 1164
Couldn't classify 332, 412
Couldn't classify 2568, 2930
Sorry, prediction snap_scaffold_841-snap.1-T1 fails validation.
(GGA)	 AG	332-412	GT	CAG
(ACA)	 AG	465-513	GT	ATG
(GTG)	 AG	1108-1164	GT	AGG
(CGC)	 AG	2568-2930	GT	CTG
-recovered snap_scaffold_841-snap.1-T1, internal, 332, 412
-recovered snap_scaffold_841-snap.1-T1, internal, 465, 513
-recovered snap_scaffold_841-snap.1-T1, internal, 1108, 1164
-recovered snap_scaffold_841-snap.1-T1, internal, 2568, 2930
Valid prediction for GlimmerHMM_glimmerT_62284-T1
Valid prediction for GeneMark_model.108468_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108467_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4248
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support