-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_840

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4204, 4217
Sorry, prediction GeneMark_model.108466_t fails validation.
(ATG)	 AG	893-906	GT	GGG
(AGG)	 AG	1049-1081	GT	GAG
(GGG)	 AG	1109-1114	GT	GAG
(GAG)	 AG	1158-1166	GT	GAG
(TTG)	 AG	1201-1212	GT	GAG
(AGG)	 AG	1236-1268	GT	GAG
(TGA)	 AG	1320-1385	GT	GGG
(GAG)	 AG	1415-1480	GT	GAG
(GAG)	 AG	1505-1522	GT	GAG
(AGG)	 AG	1551-1613	GT	GAG
(GGG)	 AG	1643-1663	GT	ATG
(GGG)	 AG	1684-1815	GT	GTG
(GGA)	 AG	2901-3008	GT	GAG
(GAG)	 AG	3047-3125	GT	AGG
(CCC)	 AG	3780-3862	GT	AGG
(CCC)	 AG	3919-4078	GT	CAG
(GGG)	 AG	4204-4217	GT	GGG
-recovered GeneMark_model.108466_t, initial, 893, 906
add_exon() Sorry, GeneMark_model.108466_t 2901-3008-terminal-1 is invalid.
-recovered GeneMark_model.108466_t, terminal, 2901, 3008
add_exon() Sorry, GeneMark_model.108466_t 3780-3862-terminal-2 is invalid.
-recovered GeneMark_model.108466_t, terminal, 3780, 3862
-recovered GeneMark_model.108466_t, internal, 893, 906
-recovered GeneMark_model.108466_t, internal, 1049, 1081
-recovered GeneMark_model.108466_t, internal, 1109, 1114
-recovered GeneMark_model.108466_t, internal, 1158, 1166
-recovered GeneMark_model.108466_t, internal, 1201, 1212
-recovered GeneMark_model.108466_t, internal, 1236, 1268
-recovered GeneMark_model.108466_t, internal, 1320, 1385
-recovered GeneMark_model.108466_t, internal, 1415, 1480
-recovered GeneMark_model.108466_t, internal, 1505, 1522
-recovered GeneMark_model.108466_t, internal, 1551, 1613
-recovered GeneMark_model.108466_t, internal, 1643, 1663
-recovered GeneMark_model.108466_t, internal, 1684, 1815
-recovered GeneMark_model.108466_t, internal, 2901, 3008
-recovered GeneMark_model.108466_t, internal, 3047, 3125
-recovered GeneMark_model.108466_t, internal, 3780, 3862
-recovered GeneMark_model.108466_t, internal, 3919, 4078
-recovered GeneMark_model.108466_t, internal, 4204, 4217
Valid prediction for GlimmerHMM_glimmerT_62283-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62283-T1 3814-4001-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4249
-exon list size: 36


building trellis

2.6    
5.3    
7.9    
10.5    
13.2    
15.8    
18.4    
21.1    
23.7    
26.3    
28.9    
31.6    
34.2    
36.8    
39.5    
42.1    
44.7    
47.4    
50.0    
52.6    
55.3    
57.9    
60.5    
63.2    
65.8    
68.4    
71.1    
73.7    
76.3    
78.9    
81.6    
84.2    
86.8    
89.5    
92.1    
94.7    
97.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support