-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_839

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62282-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62282-T1 2895-3075-terminal-1 is invalid.
Couldn't classify 1913, 2164
Sorry, prediction snap_scaffold_839-snap.1-T1 fails validation.
(GGC)	 AG	1913-2164	GT	AGG
(CGT)	 AG	3389-3532	GT	AGG
(TAT)	 AG	4059-4164	GG	AGG
-recovered snap_scaffold_839-snap.1-T1, terminal, 4059, 4164
-recovered snap_scaffold_839-snap.1-T1, internal, 1913, 2164
-recovered snap_scaffold_839-snap.1-T1, internal, 3389, 3532
Couldn't classify 223, 247
Sorry, prediction GeneMark_model.108465_t fails validation.
(GAG)	 AG	223-247	GT	AGG
(GGC)	 AG	1913-1926	GT	GGG
(GAG)	 AG	1954-1971	GT	GAG
(GAG)	 AG	2002-2007	GT	GAG
(GGG)	 AG	2033-2164	GT	AGG
(GAG)	 AG	2187-2274	CA	AAC
-recovered GeneMark_model.108465_t, terminal, 2187, 2274
-recovered GeneMark_model.108465_t, internal, 223, 247
-recovered GeneMark_model.108465_t, internal, 1913, 1926
-recovered GeneMark_model.108465_t, internal, 1954, 1971
-recovered GeneMark_model.108465_t, internal, 2002, 2007
-recovered GeneMark_model.108465_t, internal, 2033, 2164

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4258
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support