-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_838

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4086, 4241
Sorry, prediction snap_scaffold_838-snap.2-T1 fails validation.
(ATG)	 TG	3579-3638	GT	GGG
(TGG)	 AG	4086-4241	GT	AGG
-recovered snap_scaffold_838-snap.2-T1, initial, 3579, 3638
-recovered snap_scaffold_838-snap.2-T1, internal, 4086, 4241
Couldn't classify 721, 862
Sorry, prediction snap_scaffold_838-snap.1-T1 fails validation.
(TCC)	 AG	721-862	GT	GAG
(AGA)	 AG	1604-2133	GT	GGG
(GGA)	 AG	2874-3119	GA	GAG
-recovered snap_scaffold_838-snap.1-T1, terminal, 2874, 3119
-recovered snap_scaffold_838-snap.1-T1, internal, 721, 862
-recovered snap_scaffold_838-snap.1-T1, internal, 1604, 2133
Couldn't classify 703, 759
Couldn't classify 3804, 3810
Sorry, prediction GeneMark_model.108464_t fails validation.
(TCC)	 AG	703-759	GT	GGG
(GCT)	 AG	783-862	GT	GAG
(GGA)	 AG	914-940	GT	AAG
(AGA)	 AG	1495-1593	GT	GGG
(ACT)	 AG	1614-1622	GT	GCG
(GGC)	 AG	1649-1747	GT	CTG
(ACT)	 AG	1786-2040	GC	GGG
(GCT)	 AG	2067-2225	GT	CAG
(AGA)	 AG	2360-2368	GT	GAG
(AGA)	 AG	2960-3097	GT	CAG
(GGA)	 AG	3147-3326	GT	CAG
(TGA)	 AG	3375-3395	GT	AGG
(AAA)	 AG	3434-3445	GT	GGG
(TGA)	 AG	3470-3526	GT	GTG
(TGA)	 AG	3574-3678	GT	GAG
(AGG)	 AG	3804-3810	GT	AGG
-recovered GeneMark_model.108464_t, internal, 703, 759
-recovered GeneMark_model.108464_t, internal, 783, 862
-recovered GeneMark_model.108464_t, internal, 914, 940
-recovered GeneMark_model.108464_t, internal, 1495, 1593
-recovered GeneMark_model.108464_t, internal, 1614, 1622
-recovered GeneMark_model.108464_t, internal, 1649, 1747
-recovered GeneMark_model.108464_t, internal, 1786, 2040
-recovered GeneMark_model.108464_t, internal, 2067, 2225
-recovered GeneMark_model.108464_t, internal, 2360, 2368
-recovered GeneMark_model.108464_t, internal, 2960, 3097
-recovered GeneMark_model.108464_t, internal, 3147, 3326
-recovered GeneMark_model.108464_t, internal, 3375, 3395
-recovered GeneMark_model.108464_t, internal, 3434, 3445
-recovered GeneMark_model.108464_t, internal, 3470, 3526
-recovered GeneMark_model.108464_t, internal, 3574, 3678
-recovered GeneMark_model.108464_t, internal, 3804, 3810

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3429, 3575
Sorry, prediction Augustus_model.g41398.t1 fails validation.
(ATG)	 CC	3189-3239	GT	AGG
(AGA)	 AG	3429-3575	GT	GGG
-recovered Augustus_model.g41398.t1, initial, 3189, 3239
-recovered Augustus_model.g41398.t1, internal, 3429, 3575

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4262
-exon list size: 44


building trellis

2.2    
4.3    
6.5    
8.7    
10.9    
13.0    
15.2    
17.4    
19.6    
21.7    
23.9    
26.1    
28.3    
30.4    
32.6    
34.8    
37.0    
39.1    
41.3    
43.5    
45.7    
47.8    
50.0    
52.2    
54.3    
56.5    
58.7    
60.9    
63.0    
65.2    
67.4    
69.6    
71.7    
73.9    
76.1    
78.3    
80.4    
82.6    
84.8    
87.0    
89.1    
91.3    
93.5    
95.7    
97.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support