-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_836

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 675, 725
Sorry, prediction GeneMark_model.108460_t fails validation.
(AGA)	 AG	675-725	GT	GGG
(AGG)	 AG	764-799	GT	GAG
(GAG)	 AG	926-976	GT	AAG
(AGA)	 AG	1262-1309	GT	ATG
(GAG)	 AG	1331-1343	AG	AGA
-recovered GeneMark_model.108460_t, terminal, 1331, 1343
-recovered GeneMark_model.108460_t, internal, 675, 725
-recovered GeneMark_model.108460_t, internal, 764, 799
-recovered GeneMark_model.108460_t, internal, 926, 976
-recovered GeneMark_model.108460_t, internal, 1262, 1309

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 10, 32
Sorry, prediction GeneMark_model.108461_t fails validation.
(GAA)	 AG	10-32	GT	AGG
(GGA)	 AG	53-91	GT	AAG
(ATG)	 AG	134-160	GT	GGG
(AGG)	 AG	382-387	GT	AGG
(GGA)	 AG	479-566	GG	GAG
-recovered GeneMark_model.108461_t, initial, 134, 160
-recovered GeneMark_model.108461_t, terminal, 479, 566
-recovered GeneMark_model.108461_t, internal, 10, 32
-recovered GeneMark_model.108461_t, internal, 53, 91
-recovered GeneMark_model.108461_t, internal, 134, 160
-recovered GeneMark_model.108461_t, internal, 382, 387

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4267
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support