-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_833

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62277-T1
Couldn't classify 3886, 4068
Sorry, prediction snap_scaffold_833-snap.2-T1 fails validation.
(ATG)	 GG	3762-3770	GT	AGG
(GTT)	 AG	3886-4068	GT	GCG
-recovered snap_scaffold_833-snap.2-T1, initial, 3762, 3770
-recovered snap_scaffold_833-snap.2-T1, internal, 3886, 4068
Couldn't classify 1533, 1538
Couldn't classify 3886, 4055
Sorry, prediction GeneMark_model.108455_t fails validation.
(GGG)	 AG	1533-1538	GT	GAG
(GGG)	 AG	1561-1577	GT	AGG
(AGG)	 AG	2840-2897	GT	CGG
(TGG)	 AG	3068-3274	GT	ATG
(AGA)	 AG	3469-3550	GT	TTG
(GAG)	 AG	3585-3637	GT	GGG
(AGA)	 AG	3680-3770	GT	AGG
(GTT)	 AG	3886-4055	GT	GCG
-recovered GeneMark_model.108455_t, internal, 1533, 1538
-recovered GeneMark_model.108455_t, internal, 1561, 1577
-recovered GeneMark_model.108455_t, internal, 2840, 2897
-recovered GeneMark_model.108455_t, internal, 3068, 3274
-recovered GeneMark_model.108455_t, internal, 3469, 3550
-recovered GeneMark_model.108455_t, internal, 3585, 3637
-recovered GeneMark_model.108455_t, internal, 3680, 3770
-recovered GeneMark_model.108455_t, internal, 3886, 4055
Couldn't classify 3886, 4068
Sorry, prediction Augustus_model.g41394.t1 fails validation.
(ATG)	 GG	3762-3770	GT	AGG
(GTT)	 AG	3886-4068	GT	GCG
-recovered Augustus_model.g41394.t1, initial, 3762, 3770
-recovered Augustus_model.g41394.t1, internal, 3886, 4068
Couldn't classify 2840, 2897
Sorry, prediction snap_scaffold_833-snap.1-T1 fails validation.
(AGG)	 AG	2840-2897	GT	CGG
(TGA)	 AG	3026-3326	GG	AAG
-recovered snap_scaffold_833-snap.1-T1, terminal, 3026, 3326
-recovered snap_scaffold_833-snap.1-T1, internal, 2840, 2897
Couldn't classify 3886, 4068
Sorry, prediction GlimmerHMM_glimmerT_62278-T1 fails validation.
(ATG)	 GG	3762-3770	GT	AGG
(GTT)	 AG	3886-4068	GT	GCG
-recovered GlimmerHMM_glimmerT_62278-T1, initial, 3762, 3770
-recovered GlimmerHMM_glimmerT_62278-T1, internal, 3886, 4068

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4287
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support