-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_832

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62276-T1
Couldn't classify 3446, 3478
Sorry, prediction GeneMark_model.108452_t fails validation.
(ATG)	 CC	2309-2334	GT	GAG
(GCC)	 AG	2500-2694	GT	AGG
(GGA)	 AG	2758-2766	GT	GAG
(GGA)	 AG	2795-2830	GT	TTG
(AGA)	 AG	2949-2966	GT	AGG
(AGA)	 AG	2989-2994	GT	AGG
(AGG)	 AG	3017-3046	GT	AGG
(AGA)	 AG	3073-3093	GC	GAG
(AGA)	 AG	3166-3270	GT	GAG
(GGG)	 AG	3362-3397	GT	GAG
(AGC)	 AG	3446-3478	GT	AAG
-recovered GeneMark_model.108452_t, initial, 2309, 2334
-recovered GeneMark_model.108452_t, internal, 2500, 2694
-recovered GeneMark_model.108452_t, internal, 2758, 2766
-recovered GeneMark_model.108452_t, internal, 2795, 2830
-recovered GeneMark_model.108452_t, internal, 2949, 2966
-recovered GeneMark_model.108452_t, internal, 2989, 2994
-recovered GeneMark_model.108452_t, internal, 3017, 3046
-recovered GeneMark_model.108452_t, internal, 3073, 3093
-recovered GeneMark_model.108452_t, internal, 3166, 3270
-recovered GeneMark_model.108452_t, internal, 3362, 3397
-recovered GeneMark_model.108452_t, internal, 3446, 3478
Couldn't classify 47, 67
Sorry, prediction GeneMark_model.108454_t fails validation.
(AGA)	 AG	47-67	GT	AGG
(AGG)	 AG	97-108	GT	ATG
(GGT)	 AG	575-713	GA	AAG
-recovered GeneMark_model.108454_t, terminal, 575, 713
-recovered GeneMark_model.108454_t, internal, 47, 67
-recovered GeneMark_model.108454_t, internal, 97, 108
Couldn't classify 3527, 3608
Sorry, prediction snap_scaffold_832-snap.1-T1 fails validation.
(ATG)	 CC	2309-2355	GT	GGG
(GCG)	 AG	2467-2694	GT	AGG
(GCC)	 AG	3527-3608	GT	GGG
-recovered snap_scaffold_832-snap.1-T1, initial, 2309, 2355
-recovered snap_scaffold_832-snap.1-T1, internal, 2467, 2694
-recovered snap_scaffold_832-snap.1-T1, internal, 3527, 3608
Valid prediction for snap_scaffold_832-snap.2-T1
Valid prediction for GeneMark_model.108453_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4290
-exon list size: 48


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support