-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_831

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 262, 345
Couldn't classify 497, 611
Sorry, prediction snap_scaffold_831-snap.1-T1 fails validation.
(CAT)	 AG	262-345	GT	AGG
(ACC)	 AG	497-611	GT	AGG
-recovered snap_scaffold_831-snap.1-T1, internal, 262, 345
-recovered snap_scaffold_831-snap.1-T1, internal, 497, 611
Couldn't classify 497, 573
Sorry, prediction GeneMark_model.108451_t fails validation.
(ACC)	 AG	497-573	GT	GAG
(AGG)	 AG	1492-1776	GT	AAG
(GGA)	 AG	3880-3906	GT	AGG
(AGG)	 AG	3929-3934	GT	GTG
(GGG)	 AG	3959-3976	GT	GAG
(GAG)	 AG	4000-4063	CC	AGC
-recovered GeneMark_model.108451_t, terminal, 4000, 4063
-recovered GeneMark_model.108451_t, internal, 497, 573
-recovered GeneMark_model.108451_t, internal, 1492, 1776
-recovered GeneMark_model.108451_t, internal, 3880, 3906
-recovered GeneMark_model.108451_t, internal, 3929, 3934
-recovered GeneMark_model.108451_t, internal, 3959, 3976
Couldn't classify 262, 345
Sorry, prediction Augustus_model.g41393.t1 fails validation.
(CAT)	 AG	262-345	GT	AGG
(ACC)	 AG	497-611	GT	AGG
(CAA)	 AG	1917-1960	GC	AAG
-recovered Augustus_model.g41393.t1, terminal, 1917, 1960
-recovered Augustus_model.g41393.t1, internal, 262, 345
-recovered Augustus_model.g41393.t1, internal, 497, 611
-recovered Augustus_model.g41393.t1, internal, 1917, 1960

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4291
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support