-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_830

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62275-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62275-T1 1958-2334-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 867, 877
Sorry, prediction GeneMark_model.108450_t fails validation.
(ACA)	 AG	867-877	GT	GGG
(AGA)	 AG	1027-1069	GT	TTG
(AGA)	 AG	1108-1210	CA	AAC
-recovered GeneMark_model.108450_t, terminal, 1108, 1210
-recovered GeneMark_model.108450_t, internal, 867, 877
-recovered GeneMark_model.108450_t, internal, 1027, 1069

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4302
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support