-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_83

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106466_t
Valid prediction for GlimmerHMM_glimmerT_61234-T1
Valid prediction for GeneMark_model.106467_t
Couldn't classify 18313, 18546
Sorry, prediction snap_scaffold_83-snap.3-T1 fails validation.
(ATG)	 TC	11425-11631	GT	GGG
(TTC)	 AG	15606-16257	GT	AGG
(GGA)	 AG	18313-18546	GT	AGG
-recovered snap_scaffold_83-snap.3-T1, initial, 11425, 11631
-recovered snap_scaffold_83-snap.3-T1, internal, 15606, 16257
-recovered snap_scaffold_83-snap.3-T1, internal, 18313, 18546
Valid prediction for GeneMark_model.106468_t
Couldn't classify 18313, 18546
Sorry, prediction GlimmerHMM_glimmerT_61235-T1 fails validation.
(ATG)	 GG	16630-16756	GT	AGG
(GGA)	 AG	18313-18546	GT	AGG
-recovered GlimmerHMM_glimmerT_61235-T1, initial, 16630, 16756
-recovered GlimmerHMM_glimmerT_61235-T1, internal, 18313, 18546
Couldn't classify 18470, 18546
Sorry, prediction GeneMark_model.106470_t fails validation.
(ATG)	 GC	18355-18362	GT	CGG
(GAG)	 AG	18405-18446	GT	CTG
(AGG)	 AG	18470-18546	GT	AGG
-recovered GeneMark_model.106470_t, initial, 18355, 18362
-recovered GeneMark_model.106470_t, internal, 18405, 18446
-recovered GeneMark_model.106470_t, internal, 18470, 18546

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61233-T1
Valid prediction for GeneMark_model.106465_t
Valid prediction for GeneMark_model.106469_t
Valid prediction for GeneMark_model.106464_t
Couldn't classify 914, 1024
Sorry, prediction snap_scaffold_83-snap.2-T1 fails validation.
(GGG)	 AG	914-1024	GT	AGG
(GGG)	 AG	2762-2994	GT	AGG
(GTG)	 AG	3070-3370	GT	AGG
(AAT)	 AG	7612-7708	GT	GCG
(CGA)	 AG	10136-10200	TT	AGT
-recovered snap_scaffold_83-snap.2-T1, terminal, 10136, 10200
-recovered snap_scaffold_83-snap.2-T1, internal, 914, 1024
-recovered snap_scaffold_83-snap.2-T1, internal, 2762, 2994
-recovered snap_scaffold_83-snap.2-T1, internal, 3070, 3370
-recovered snap_scaffold_83-snap.2-T1, internal, 7612, 7708
Valid prediction for snap_scaffold_83-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 18056, rend_intergenic: 11425  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 18969
-exon list size: 91


building trellis

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-found 5 predictions from path traversal
Error with prediction: snap lend_intergenic: 18056, rend_intergenic: 11425  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support