-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_829

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 23, 194
Couldn't classify 3907, 4031
Sorry, prediction snap_scaffold_829-snap.1-T1 fails validation.
(AGC)	 AG	23-194	GT	AGG
(CCT)	 AG	2836-2926	GT	CTG
(CAG)	 AG	3467-3591	GT	AGG
(TGC)	 AG	3907-4031	GT	TGG
-recovered snap_scaffold_829-snap.1-T1, internal, 23, 194
-recovered snap_scaffold_829-snap.1-T1, internal, 2836, 2926
-recovered snap_scaffold_829-snap.1-T1, internal, 3467, 3591
-recovered snap_scaffold_829-snap.1-T1, internal, 3907, 4031
Couldn't classify 1, 321
Sorry, prediction pasa_asmbl_53674.p1 fails validation.
(GAG)	 GG	1-321	AC	AGA

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 329, 473
Sorry, prediction Augustus_model.g41392.t1 fails validation.
(GTG)	 AG	329-473	GT	GCG
(AGG)	 AG	654-861	GT	AGG
(GCA)	 AG	1384-1525	GT	AGG
(AAA)	 AG	2240-2264	GT	CGG
(AGC)	 AG	3557-3693	CA	AAC
-recovered Augustus_model.g41392.t1, terminal, 3557, 3693
-recovered Augustus_model.g41392.t1, internal, 329, 473
-recovered Augustus_model.g41392.t1, internal, 654, 861
-recovered Augustus_model.g41392.t1, internal, 1384, 1525
-recovered Augustus_model.g41392.t1, internal, 2240, 2264
Couldn't classify 329, 473
Sorry, prediction snap_scaffold_829-snap.2-T1 fails validation.
(GTG)	 AG	329-473	GT	GCG
(AGG)	 AG	654-861	GT	AGG
(GCA)	 AG	1384-1525	GT	AGG
(TCC)	 AG	2061-2090	CG	GAC
-recovered snap_scaffold_829-snap.2-T1, terminal, 2061, 2090
-recovered snap_scaffold_829-snap.2-T1, internal, 329, 473
-recovered snap_scaffold_829-snap.2-T1, internal, 654, 861
-recovered snap_scaffold_829-snap.2-T1, internal, 1384, 1525
Couldn't classify 329, 473
Sorry, prediction GeneMark_model.108449_t fails validation.
(GTG)	 AG	329-473	GT	GCG
(AGG)	 AG	654-861	GT	AGG
(GAC)	 AG	1405-1525	GT	AGG
(CTG)	 AG	3559-3693	CA	AAC
-recovered GeneMark_model.108449_t, terminal, 3559, 3693
-recovered GeneMark_model.108449_t, internal, 329, 473
-recovered GeneMark_model.108449_t, internal, 654, 861
-recovered GeneMark_model.108449_t, internal, 1405, 1525
Couldn't classify 329, 473
Sorry, prediction GlimmerHMM_glimmerT_62274-T1 fails validation.
(GTG)	 AG	329-473	GT	GCG
(AGG)	 AG	654-861	GT	AGG
(GCA)	 AG	1384-1514	GT	GCG
(AGC)	 AG	3557-3693	CA	AAC
-recovered GlimmerHMM_glimmerT_62274-T1, terminal, 3557, 3693
-recovered GlimmerHMM_glimmerT_62274-T1, internal, 329, 473
-recovered GlimmerHMM_glimmerT_62274-T1, internal, 654, 861
-recovered GlimmerHMM_glimmerT_62274-T1, internal, 1384, 1514

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4031, rend_intergenic: 2218  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4307
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4031, rend_intergenic: 2218  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support