-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_828

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 829, 915
Couldn't classify 4275, 4303
Sorry, prediction GeneMark_model.108448_t fails validation.
(AGA)	 AG	829-915	GT	GGG
(AGG)	 AG	2051-2110	GT	ATG
(CGA)	 AG	2151-2251	GT	CAG
(CAG)	 AG	2281-2344	GT	AAG
(AGG)	 AG	3979-4074	GT	GAG
(AGA)	 AG	4122-4217	GC	GAG
(AGC)	 AG	4243-4251	GC	GAG
(AGC)	 AG	4275-4303	GC	GAG
-recovered GeneMark_model.108448_t, internal, 829, 915
-recovered GeneMark_model.108448_t, internal, 2051, 2110
-recovered GeneMark_model.108448_t, internal, 2151, 2251
-recovered GeneMark_model.108448_t, internal, 2281, 2344
-recovered GeneMark_model.108448_t, internal, 3979, 4074
-recovered GeneMark_model.108448_t, internal, 4122, 4217
-recovered GeneMark_model.108448_t, internal, 4243, 4251
-recovered GeneMark_model.108448_t, internal, 4275, 4303

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4311
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support