-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_824

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3799, 3855
Sorry, prediction GeneMark_model.108442_t fails validation.
(ATG)	 AC	1391-1557	GT	GAG
(GAT)	 AG	1648-1884	GT	CAG
(AGA)	 AG	3799-3855	GT	ACG
-recovered GeneMark_model.108442_t, initial, 1391, 1557
-recovered GeneMark_model.108442_t, internal, 1648, 1884
-recovered GeneMark_model.108442_t, internal, 3799, 3855
Couldn't classify 337, 425
Sorry, prediction GeneMark_model.108441_t fails validation.
(GCC)	 AG	337-425	GT	ACG
(AGA)	 AG	651-665	GT	GAG
(AGA)	 AG	717-872	GT	AGG
(AGG)	 AG	899-961	GT	AGG
(AGA)	 AG	992-1080	GT	GAG
(CAG)	 AG	1103-1160	GT	CTG
(GAG)	 AG	1229-1241	AT	AAA
-recovered GeneMark_model.108441_t, terminal, 992, 1080
-recovered GeneMark_model.108441_t, terminal, 1229, 1241
-recovered GeneMark_model.108441_t, internal, 337, 425
-recovered GeneMark_model.108441_t, internal, 651, 665
-recovered GeneMark_model.108441_t, internal, 717, 872
-recovered GeneMark_model.108441_t, internal, 899, 961
-recovered GeneMark_model.108441_t, internal, 992, 1080
-recovered GeneMark_model.108441_t, internal, 1103, 1160

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 386, 392
Sorry, prediction snap_scaffold_824-snap.2-T1 fails validation.
(TAC)	 AG	386-392	GT	AGG
(AGT)	 AG	680-873	GT	CTG
(ACG)	 AG	1967-2057	CG	GAC
-recovered snap_scaffold_824-snap.2-T1, terminal, 1967, 2057
-recovered snap_scaffold_824-snap.2-T1, internal, 386, 392
-recovered snap_scaffold_824-snap.2-T1, internal, 680, 873
Couldn't classify 3883, 3966
Sorry, prediction snap_scaffold_824-snap.1-T1 fails validation.
(ATG)	 AA	2371-2531	GT	AGG
(GGC)	 AG	2695-2941	GT	TNG
(AAG)	 AG	3883-3966	GT	CGG
-recovered snap_scaffold_824-snap.1-T1, initial, 2371, 2531
-recovered snap_scaffold_824-snap.1-T1, internal, 2695, 2941
-recovered snap_scaffold_824-snap.1-T1, internal, 3883, 3966

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4325
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support