-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_821

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 197, 217
Sorry, prediction GeneMark_model.108438_t fails validation.
(GGC)	 AG	197-217	GT	AGG
(GCT)	 AG	238-243	GT	AGG
(GCA)	 AG	290-295	GT	AGG
(GGG)	 AG	1662-1730	GT	GGG
(AGG)	 AG	2470-2488	GT	GAG
-recovered GeneMark_model.108438_t, terminal, 2470, 2488
-recovered GeneMark_model.108438_t, internal, 197, 217
-recovered GeneMark_model.108438_t, internal, 238, 243
-recovered GeneMark_model.108438_t, internal, 290, 295
-recovered GeneMark_model.108438_t, internal, 1662, 1730
-recovered GeneMark_model.108438_t, internal, 2470, 2488
Couldn't classify 4264, 4296
Sorry, prediction GeneMark_model.108437_t fails validation.
(ATG)	 TC	3592-3608	GT	AGG
(AGG)	 AG	3634-3648	GT	AGG
(GGT)	 AG	3676-3681	GT	TTG
(AGG)	 AG	3704-3718	GT	AGG
(TGA)	 AG	3742-3816	GT	GGG
(TGA)	 AG	3840-3854	GT	GGG
(GGT)	 AG	3884-3907	GT	TTG
(GGT)	 AG	3932-3970	GT	GGG
(GGT)	 AG	4000-4005	GT	TCG
(GGT)	 AG	4030-4038	GT	GGG
(GGT)	 AG	4068-4073	GT	TCG
(GGT)	 AG	4098-4148	GT	AGG
(GGT)	 AG	4186-4218	GT	AGG
(AGG)	 AG	4264-4296	GT	GGG
-recovered GeneMark_model.108437_t, initial, 3592, 3608
-recovered GeneMark_model.108437_t, internal, 3634, 3648
-recovered GeneMark_model.108437_t, internal, 3676, 3681
-recovered GeneMark_model.108437_t, internal, 3704, 3718
-recovered GeneMark_model.108437_t, internal, 3742, 3816
-recovered GeneMark_model.108437_t, internal, 3840, 3854
-recovered GeneMark_model.108437_t, internal, 3884, 3907
-recovered GeneMark_model.108437_t, internal, 3932, 3970
-recovered GeneMark_model.108437_t, internal, 4000, 4005
-recovered GeneMark_model.108437_t, internal, 4030, 4038
-recovered GeneMark_model.108437_t, internal, 4068, 4073
-recovered GeneMark_model.108437_t, internal, 4098, 4148
-recovered GeneMark_model.108437_t, internal, 4186, 4218
-recovered GeneMark_model.108437_t, internal, 4264, 4296

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4331
-exon list size: 38


building trellis

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17.5    
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22.5    
25.0    
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30.0    
32.5    
35.0    
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40.0    
42.5    
45.0    
47.5    
50.0    
52.5    
55.0    
57.5    
60.0    
62.5    
65.0    
67.5    
70.0    
72.5    
75.0    
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80.0    
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85.0    
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90.0    
92.5    
95.0    
97.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support