-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_82

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106463_t
Couldn't classify 776, 1041
Sorry, prediction GeneMark_model.106461_t fails validation.
(CTG)	 AG	776-1041	GT	AGG
(GGA)	 AG	1847-1935	GT	CAG
(AAA)	 AG	3635-3752	AC	GAA
-recovered GeneMark_model.106461_t, terminal, 3635, 3752
-recovered GeneMark_model.106461_t, internal, 776, 1041
-recovered GeneMark_model.106461_t, internal, 1847, 1935
Valid prediction for Augustus_model.g40730.t1
Valid prediction for snap_scaffold_82-snap.4-T1
Valid prediction for snap_scaffold_82-snap.3-T1
Valid prediction for Augustus_model.g40727.t1
Valid prediction for snap_scaffold_82-snap.1-T1
Valid prediction for snap_scaffold_82-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_61230-T1
Valid prediction for GlimmerHMM_glimmerT_61232-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61231-T1
Valid prediction for Augustus_model.g40729.t1
Valid prediction for Augustus_model.g40728.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 19856
-exon list size: 35


building trellis

2.7    
5.4    
8.1    
10.8    
13.5    
16.2    
18.9    
21.6    
24.3    
27.0    
29.7    
32.4    
35.1    
37.8    
40.5    
43.2    
45.9    
48.6    
51.4    
54.1    
56.8    
59.5    
62.2    
64.9    
67.6    
70.3    
73.0    
75.7    
78.4    
81.1    
83.8    
86.5    
89.2    
91.9    
94.6    
97.3    
-found 5 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 5 predictions persist after filtering for low support