-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_818

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 900, 1037
Sorry, prediction snap_scaffold_818-snap.2-T1 fails validation.
(CTC)	 AG	900-1037	GT	AGG
(AGA)	 AG	1063-3261	CC	AGC
-recovered snap_scaffold_818-snap.2-T1, terminal, 1063, 3261
-recovered snap_scaffold_818-snap.2-T1, internal, 900, 1037
Couldn't classify 4202, 4288
Sorry, prediction Augustus_model.g41388.t1 fails validation.
(ATG)	 TG	216-221	GT	TGG
(CTC)	 AG	900-1037	GT	AGG
(GAG)	 AG	4202-4288	GT	AGG
-recovered Augustus_model.g41388.t1, initial, 216, 221
-recovered Augustus_model.g41388.t1, internal, 900, 1037
-recovered Augustus_model.g41388.t1, internal, 4202, 4288
Couldn't classify 900, 1037
Couldn't classify 4202, 4288
Sorry, prediction GeneMark_model.108433_t fails validation.
(CTC)	 AG	900-1037	GT	AGG
(CCA)	 AG	1120-3121	GT	AGG
(GAG)	 AG	3226-3845	GT	TTG
(GAG)	 AG	4202-4288	GT	AGG
-recovered GeneMark_model.108433_t, internal, 900, 1037
-recovered GeneMark_model.108433_t, internal, 1120, 3121
-recovered GeneMark_model.108433_t, internal, 3226, 3845
-recovered GeneMark_model.108433_t, internal, 4202, 4288
Couldn't classify 4202, 4288
Sorry, prediction snap_scaffold_818-snap.1-T1 fails validation.
(ATG)	 TC	3350-3501	GT	TTG
(AGA)	 AG	3584-3845	GT	TTG
(GAG)	 AG	4202-4288	GT	AGG
-recovered snap_scaffold_818-snap.1-T1, initial, 3350, 3501
-recovered snap_scaffold_818-snap.1-T1, internal, 3584, 3845
-recovered snap_scaffold_818-snap.1-T1, internal, 4202, 4288
Couldn't classify 900, 1037
Sorry, prediction GlimmerHMM_glimmerT_62266-T1 fails validation.
(CTC)	 AG	900-1037	GT	AGG
(GAG)	 AG	4202-4300	AG	AGA
-recovered GlimmerHMM_glimmerT_62266-T1, terminal, 4202, 4300
-recovered GlimmerHMM_glimmerT_62266-T1, internal, 900, 1037

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4336
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support