-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_817

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4306, 4326
Sorry, prediction GeneMark_model.108432_t fails validation.
(ATG)	 AA	2156-2163	GT	ACG
(AAT)	 AG	2379-2384	GT	AGG
(GGG)	 AG	3662-3790	GT	GGG
(ATT)	 AG	3813-3823	GT	TGG
(TAG)	 AG	4160-4283	GT	GGG
(GGG)	 AG	4306-4326	GC	GAG
-recovered GeneMark_model.108432_t, initial, 2156, 2163
-recovered GeneMark_model.108432_t, internal, 2379, 2384
-recovered GeneMark_model.108432_t, internal, 3662, 3790
-recovered GeneMark_model.108432_t, internal, 3813, 3823
-recovered GeneMark_model.108432_t, internal, 4160, 4283
-recovered GeneMark_model.108432_t, internal, 4306, 4326
Couldn't classify 9, 507
Sorry, prediction GeneMark_model.108430_t fails validation.
(ACA)	 AG	9-507	GT	GAG
(AGG)	 AG	750-771	GG	GAG
-recovered GeneMark_model.108430_t, terminal, 750, 771
-recovered GeneMark_model.108430_t, internal, 9, 507
Couldn't classify 1, 883
Sorry, prediction GlimmerHMM_glimmerT_62264-T1 fails validation.
(GGA)	 AG	1-883	CT	AAC
Couldn't classify 365, 733
Sorry, prediction pasa_asmbl_53668.p2 fails validation.
(GAC)	 AG	365-733	GT	AGG
-recovered pasa_asmbl_53668.p2, internal, 365, 733
Valid prediction for GeneMark_model.108431_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41387.t1
add_exon() Sorry, Augustus_model.g41387.t1 152-468-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_62265-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62265-T1 84-468-terminal-1 is invalid.
Couldn't classify 77, 462
Couldn't classify 3700, 3734
Sorry, prediction snap_scaffold_817-snap.1-T1 fails validation.
(CTC)	 AG	77-462	GT	GTG
(ATT)	 AG	3700-3734	GT	TGG
-recovered snap_scaffold_817-snap.1-T1, internal, 77, 462
-recovered snap_scaffold_817-snap.1-T1, internal, 3700, 3734

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4339
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support