-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_816

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_816-snap.1-T1
add_exon() Sorry, snap_scaffold_816-snap.1-T1 2855-3453-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 572, 590
Couldn't classify 3901, 3950
Sorry, prediction GeneMark_model.108429_t fails validation.
(CCA)	 AG	572-590	GT	GGG
(TTG)	 AG	3147-3173	GT	GCG
(GGG)	 AG	3367-3390	GT	TGG
(GAG)	 AG	3414-3422	GT	GGG
(GAG)	 AG	3446-3451	GT	CAG
(AGA)	 AG	3521-3571	GC	GAG
(AGG)	 AG	3601-3609	GT	GAG
(AGC)	 AG	3635-3655	GT	GAG
(AGA)	 AG	3681-3701	GT	GAG
(AGA)	 AG	3727-3735	GT	GAG
(AGA)	 AG	3761-3775	GT	GAG
(AGA)	 AG	3823-3837	GT	GAG
(AGA)	 AG	3859-3867	GC	GAG
(AGA)	 AG	3901-3950	GT	AGG
-recovered GeneMark_model.108429_t, terminal, 3727, 3735
-recovered GeneMark_model.108429_t, internal, 572, 590
-recovered GeneMark_model.108429_t, internal, 3147, 3173
-recovered GeneMark_model.108429_t, internal, 3367, 3390
-recovered GeneMark_model.108429_t, internal, 3414, 3422
-recovered GeneMark_model.108429_t, internal, 3446, 3451
-recovered GeneMark_model.108429_t, internal, 3521, 3571
-recovered GeneMark_model.108429_t, internal, 3601, 3609
-recovered GeneMark_model.108429_t, internal, 3635, 3655
-recovered GeneMark_model.108429_t, internal, 3681, 3701
-recovered GeneMark_model.108429_t, internal, 3727, 3735
-recovered GeneMark_model.108429_t, internal, 3761, 3775
-recovered GeneMark_model.108429_t, internal, 3823, 3837
-recovered GeneMark_model.108429_t, internal, 3859, 3867
-recovered GeneMark_model.108429_t, internal, 3901, 3950

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4344
-exon list size: 35


building trellis

2.7    
5.4    
8.1    
10.8    
13.5    
16.2    
18.9    
21.6    
24.3    
27.0    
29.7    
32.4    
35.1    
37.8    
40.5    
43.2    
45.9    
48.6    
51.4    
54.1    
56.8    
59.5    
62.2    
64.9    
67.6    
70.3    
73.0    
75.7    
78.4    
81.1    
83.8    
86.5    
89.2    
91.9    
94.6    
97.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support